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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GTCCTGGAGGATCGTTTAGCACGGAAGCGGAGTGGCTAACACACACACCGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCGCACGGTTTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCCTGGTATGAAGAACATAGTCCTGGTTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTAATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGTTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAGAGAGGCTGCGTTGGGGGCAGGATTCTCTGACAAGATTCCAGCTCACACTGTCACCATGGCCTGCATCTCATCCAACCAGGCAATGACCTCAGCTGCTGGTCTGATTGCTGCTGGTCAGTGTGACGCAGTCGTAGCAGGAGGAGTGGAATTCATGTCTGACGTTCCGATCCGTCACAGCCGAAAGATGAGGAAGACCATGTTGTCCCTC]
[+] EMBL CA590993 [GTCCTGGAGGATCGTTTAGCACGGAAGCGGAGTGGCTAACACACACACCGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCGCACGGTTTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCCTGGTATGAAGAACATAGTCCTGGTTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTAATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGTTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAGAGAGGCTGCGTTGGGGGCAGGATTCTCTGACAAGATTCCAGCTCACACTGTCACCATGGCCTGCATCTCATCCAACCAGGCAATGACCTCAGCTGCTGGTCTGATTGCTGCTGGTCAGTGTGACGCAGTCGTAGCAGGAGGAGTGGAATTCATGTCTGACGTTCCGATCCGTCACAGCCGAAAGATGAGGAAGACCATGTTGTCCCTC]
consensusID : consensus_1524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence
[TTATTTATCATCTACAGGCAGTAGTAGTGGCATTTCGTTCCATTTCGCATTGCATTAAATATGATTCCATATCCCATCTGTCTGTAGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTGGGCGGGNCGGCACGGATTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGGCCTGGTATGAAGAACATAGTCCTGGGTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGGTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAG]
[+] EMBL FR0062651 [TTATTTATCATCTACAGGCAGTAGTAGTGGCATTTCGTTCCATTTCGCATTGCATTAAATATGATTCCATATCCCATCTGTCTGTAGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCGGCACGG TTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAAAAGACTCTGGCTCGG ]
[+] EMBL FR0061050 [ CGGAGCTGCTCGCTCAGAACTGGGCTGGNCCGCACGGATTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCCTGGTATGAAGAACATAGTCCTGGGTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGGTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1524#0 ---------------------------------GTCCTGGAGGATCGTTTAGCACGGAAG 27
consensus_1524#1 TTATTTATCATCTACAGGCAGTAGTAGTGGCATTTCGTTCCATTTCGCATTGCATTAAAT 60
** * *** * *** **
consensus_1524#0 CGGAGTGGCTAACACACACACC----GAACACAACAATGGCTTCTACGATGCTAAATATG 83
consensus_1524#1 ATGATTCCATATCCCATCTGTCTGTAGAACACAACAATGGCTTCTACGATGCTAAATATG 120
** * ** * ** * **********************************
consensus_1524#0 ACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCG-CACGGTTTGGCACAAGAGCTCTGAG 142
consensus_1524#1 ACGCGGAGCTGCTCGCTCAGAACTGGGCGGGNCGGCACGGATTGGCACAAGAGCTCTGAG 180
************************ *** ** ***** *******************
consensus_1524#0 CACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCC 202
consensus_1524#1 CACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGGCC 240
********************************************************* **
consensus_1524#0 TGGTATGAAGAACATAGTCCTGGTTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAAC 262
consensus_1524#1 TGGTATGAAGAACATAGTCCTGGGTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAAC 300
*********************** ************************************
consensus_1524#0 CACATACGCTGACCTAATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCA 322
consensus_1524#1 CACATACGCTGACCTA-TGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCA 359
**************** *******************************************
consensus_1524#0 CAAGACGGACCTACCCAGAGATGCTGTTGACTACATCATCTATGGAACAGTCATCCAAGA 382
consensus_1524#1 CAAGACGGACCTACCCAGAGATGCTGGTGACTACATCATCTATGGAACAGTCATCCAAGA 419
************************** *********************************
consensus_1524#0 GGTCAAAACCAGCAATATAGCCAGAGAGGCTGCGTTGGGGGCAGGATTCTCTGACAAGAT 442
consensus_1524#1 GGTCAAAACCAGCAATATAGCCAG------------------------------------ 443
************************
consensus_1524#0 TCCAGCTCACACTGTCACCATGGCCTGCATCTCATCCAACCAGGCAATGACCTCAGCTGC 502
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 TGGTCTGATTGCTGCTGGTCAGTGTGACGCAGTCGTAGCAGGAGGAGTGGAATTCATGTC 562
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 TGACGTTCCGATCCGTCACAGCCGAAAGATGAGGAAGACCATGTTGTCCCTC 614
consensus_1524#1 ----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |