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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1569 cluster # 1569       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1569#0 length = 282 sequences # 2  
 consensus_1569#1 length = 199 sequences # 1  
consensusID : consensus_1569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 282
fasta sequence 
                              [GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCAAGACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGTAAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGTAAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGTGTG]

[+] EMBL FR0057990            [GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCATGACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGTAAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGTAAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGT   ]
[+] EMBL CA329928             [                                                         AAGACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGTAAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGCTAAATGCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGTAAAGGATTTTCTTATTGCATAATAAATGTATAGCTTTGTGTG]




>consensus_1569#0
GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCAAG
ACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGT
AAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGC
CATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGT
AAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGTGTG

consensusID : consensus_1569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence 
                              [CTTTTATATCAGAACATCACGGAAGGGCATCTGGGGCTCATTTTTTTTTAACTTTCATTCCCTCCCTAAATTCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACACTATACCAACTATCTGTAAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGTGCCATCTCATACATTTGTC]

[+] EMBL FR0062542            [CTTTTATATCAGAACATCACGGAAGGGCATCTGGGGCTCATTTTTTTTTAACTTTCATTCCCTCCCTAAATTCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACACTATACCAACTATCTGTAAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGTGCCATCTCATACATTTGTC]




>consensus_1569#1
CTTTTATATCAGAACATCACGGAAGGGCATCTGGGGCTCATTTTTTTTTAACTTTCATTC
CCTCCCTAAATTCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAA
CACACTATACCAACTATCTGTAAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGT
GCCATCTCATACATTTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1569#0      GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCAAG 60
consensus_1569#1      ------------------------------------------------------------
                                                                                  

consensus_1569#0      ACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGT 120
consensus_1569#1      --------------------------------------CTTTTATATCAGAACATCACGG 22
                                                            ***    **** * ******* 

consensus_1569#0      AAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGC 180
consensus_1569#1      AAGGGCATCTGGGGC-TCATTTTTTTTTAACTTTCATTCCCTCCCTAAATTCCTCATTGC 81
                      **** ******  *  ***  *****************  **   ***** *********

consensus_1569#0      CATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGT 240
consensus_1569#1      CATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACACTATACCAACTATCTGT 141
                      ******************************************* **   ***********

consensus_1569#0      AAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGTGTG---------------- 282
consensus_1569#1      AAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGTGCCATCTCATACATTTGTC 199
                      **** *************************** *******


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)