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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence
[GACATATTTAGTCTCTGAATAGATCCGTTCGAGTTCCTTCCATCTTTAAAGATGTCCAGATTTTTAAAGCAGAACACTTTATCTGAACTTGTACAATCTTTGTTGTTGAACTGTTTCTTAAAGTGAGCGTTTAACTTCATGAAACCTTAGAACCGACCATGACTCTTTGATGTCTCCACATCGTAGCAACCCTACCTGAGGGTATTTTACTGCTAGCTGTAGCATCTAATGCTACTGCTAGCAGTAGCATCTAATGCTACTGGCTATTTTCCACTCGTGCCAACACAATAATGTTTTCTTTAGGGTGGTTTTAATCCATATTGATTTGATCCGTCATCTCTCTGTACCTCGAGTGATGACGTCAGCTGCAAGCGGGTCAGAAATGAGGAACCTTCATGCTGGAGCTGCGGTTGCCAGTCGGGACGCTTTCAGAGAGGCACCAATGTGCTAAAGTAGAAGCGGTTGTTGCAACTGACACGCCGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAGGGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTAAAGACAGGAGCAACAGCCACCTCCTCCACACACCTGAGCAGCATGTTCTGCTTCAGTGGCCTCATCGTAGCGTTGTGCTTCCAGCACTTTCTTTGAGGATTCAGGTGTTTCTGTGTGTGTAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGGTGCGGCAAAGAAGACGTTTGTCCATCAAGAAAGAGAGAACATGTTCAGAGCTCCAGCAGAAAGCTTTGGAGCAGACGTCATGGCTCCAGCCCCTCACACATACGTGGATGCCATCAGGACGGGTCTAAGTTCTTCATCACAAGATCACAGTCAGATTGAG]
[+] EMBL CA589892 [GACATATTTAGTCTCTGAATAGATCCGTTCGAGTTCCTTCCATCTTTAAAGATGTCCAGATTTTTAAAGCAGAACACTTTATCTGAACTTGTACAATCTTTGTTGTTGAACTGTTTCTTAAAGTGAGCGTTTAACTTCATGAAACCTTAGAACCGACCATGACTCTTTGATGTCTCCACATCGTAGCAACCCTACCTGAGGGTATTTTACTGCTAGCTGTAGCATCTAATGCTACTGCTAGCAGTAGCATCTAATGCTACTGGCTATTTTCCACTCGTGCCAACACAATAATGTTTTCTTTAGGGTGGTTTTAATCCATATTGATTTGATCCGTCATCTCTCTGTACCTCGAGTGATGACGTCAGCTGCAAGCGGGTCAGAAATGAGGAACCTTCATGCTGGAGCTGCGGTTGCCAGTCGGGACGCTTTCAGAGAGGCACCAATGTGCTAAAGTAGAAGCGGTTGTTGCAACTGACACGCCGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAGGGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGG ]
[+] EMBL CA590591 [ GAAGCGGTTGTTGCAACTGACACGCCGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAGGGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTAAAGACAGGAGCAACAGCCACCTCCTCCACACACCTGAGCAGCATGTTCTGCTTCAGTGGCCTCATCGTAGCGTTGTGCTTCCAGCACTTTCTTTGAGGATTCAGGTGTTTCTGTGTGTGTAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGGTGCGGCAAAGAAGACGTTTGTCCATCAAGAAAGAGAGAACATGTTCAGAGCTCCAGCAGAAAGCTTTGGAGCAGACGTCATGGCTCCAGCCCCTCACACATACGTGGATGCCATCAGGACGGGTCTAAGTTCTTCATCACAAGATCACAGTCAGATTGAG]
consensusID : consensus_1571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence
[TTGTGTGCAGGGAGGGCAACCATTGCCAGGTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGTGGCGGAAAGAAGACGTTTGTGCATCAAGAAAGAGAGAACATGTGCAGAGCTGCAGCAGAAAGCTTTGGGGCGGACGTCATGGCTCCA]
[+] EMBL FR0062504 [TTGTGTGCAGGGAGGGCAACCATTGCCAGGTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGTGGCGGAAAGAAGACGTTTGTGCATCAAGAAAGAGAGAACATGTGCAGAGCTGCAGCAGAAAGCTTTGGGGCGGACGTCATGGCTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1571#0 GACATATTTAGTCTCTGAATAGATCCGTTCGAGTTCCTTCCATCTTTAAAGATGTCCAGA 60
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 TTTTTAAAGCAGAACACTTTATCTGAACTTGTACAATCTTTGTTGTTGAACTGTTTCTTA 120
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 AAGTGAGCGTTTAACTTCATGAAACCTTAGAACCGACCATGACTCTTTGATGTCTCCACA 180
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 TCGTAGCAACCCTACCTGAGGGTATTTTACTGCTAGCTGTAGCATCTAATGCTACTGCTA 240
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 GCAGTAGCATCTAATGCTACTGGCTATTTTCCACTCGTGCCAACACAATAATGTTTTCTT 300
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 TAGGGTGGTTTTAATCCATATTGATTTGATCCGTCATCTCTCTGTACCTCGAGTGATGAC 360
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 GTCAGCTGCAAGCGGGTCAGAAATGAGGAACCTTCATGCTGGAGCTGCGGTTGCCAGTCG 420
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 GGACGCTTTCAGAGAGGCACCAATGTGCTAAAGTAGAAGCGGTTGTTGCAACTGACACGC 480
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 CGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAG 540
consensus_1571#1 --------------------------------------------------TTGTGTGCAG 10
*********
consensus_1571#0 GGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTG 600
consensus_1571#1 GGAGGGCAACCATTGCCAGGTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTG 70
******************* ****************************************
consensus_1571#0 TAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTAAAGACAGGAGCA 660
consensus_1571#1 TAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTA------------ 118
************************************************
consensus_1571#0 ACAGCCACCTCCTCCACACACCTGAGCAGCATGTTCTGCTTCAGTGGCCTCATCGTAGCG 720
consensus_1571#1 ------------------------------------------------------------
consensus_1571#0 TTGTGCTTCCAGCACTTTCTTTGAGGATTCAGGTGTTTCTGTGTGTGTAGGTATGACCAT 780
consensus_1571#1 -----------------------------------------------------TGACCAT 125
*******
consensus_1571#0 GTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGG 840
consensus_1571#1 GTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGG 185
************************************************************
consensus_1571#0 GATGGCGCCTCCACCAGAGGTGCGGCAAAGAAGACGTTTGTCCATCAAGAAAGAGAGAAC 900
consensus_1571#1 GATGGCGCCTCCACCAGAGTGGCGG-AAAGAAGACGTTTGTGCATCAAGAAAGAGAGAAC 244
******************* **** *************** ******************
consensus_1571#0 ATGTTCAGAGCTCCAGCAGAAAGCTTTGGAGCAGACGTCATGGCTCCAGCCCCTCACACA 960
consensus_1571#1 ATGTGCAGAGCTGCAGCAGAAAGCTTTGGGGCGGACGTCATGGCTCCA------------ 292
**** ******* **************** ** ***************
consensus_1571#0 TACGTGGATGCCATCAGGACGGGTCTAAGTTCTTCATCACAAGATCACAGTCAGATTGAG 1020
consensus_1571#1 ------------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |