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Takifugu rubripes
cluster # 1584 cluster # 1584       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1584#0 length = 386 sequences # 2  
 consensus_1584#1 length = 328 sequences # 1  
consensusID : consensus_1584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 386
fasta sequence 
                              [CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAACTTGATCACCGCGAAGGGGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAGACAGAGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGATCTCACCCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATGGCTACGACAAAGAAGGGAACAAACTAT]

[+] EMBL FR0060285            [CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAACTTGATCACCGCGAAGGAGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAGACAGAGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCCGAGAGTGTAATTCCCAG                                                               ]
[+] EMBL FR0059452            [                                                                           GGGAGCAGGACATCGAGAAGAAAATTGTGCCCACGAGACAGAGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGATCTCA CCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATGGCTACGACAAAGAAGGGAACAAACTAT]




>consensus_1584#0
CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAAC
TTGATCACCGCGAAGGGGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAGACAGAGAT
TTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGC
TCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATG
ATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGATC
TCACCCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATGG
CTACGACAAAGAAGGGAACAAACTAT

consensusID : consensus_1584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence 
                              [GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGTTCCTCCATGGTTACGACAAAGAAGGAACAAACTATTCTGGTTCAAAGTGAAGCTACATGTCA]

[+] EMBL FR0059466            [GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGTTCCTCCATGGTTACGACAAAGAAGGAACAAACTATTCTGGTTCAAAGTGAAGCTACATGTCA]




>consensus_1584#1
GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGATTTACAAATGAGTTTCTCCAAGA
TTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGT
GGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGA
AAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCGAGAGTGTAATTCCCAG
ATGGATGTTCGAGACCGGGGCCGTGTTCCTCCATGGTTACGACAAAGAAGGAACAAACTA
TTCTGGTTCAAAGTGAAGCTACATGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1584#0      CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAAC 60
consensus_1584#1      ------------------------------------------------------------
                                                                                  

consensus_1584#0      TTGATCACCGCGAAGGGGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAG-ACAGAGA 119
consensus_1584#1      -----------------------GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGA 37
                                             *   *   *     *************** **   **

consensus_1584#0      TTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGG 179
consensus_1584#1      TTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGG 97
                      ************************************************************

consensus_1584#0      CTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGAT 239
consensus_1584#1      CTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGAT 157
                      ************************************************************

consensus_1584#0      GATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGAT 299
consensus_1584#1      GATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGAT 217
                      ********************************************* **************

consensus_1584#0      CTCACCCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATG 359
consensus_1584#1      CTCACC-GAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTG-TTCCTCCATG 275
                      ****** ****************************************** **********

consensus_1584#0      GCTACGACAAAGAAGGGAACAAACTAT--------------------------- 386
consensus_1584#1      GTTACGACAAAGAAGG-AACAAACTATTCTGGTTCAAAGTGAAGCTACATGTCA 328
                      * ************** **********


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)