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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[GACATTCTTGGGTGGCCTGAATACGACTGGAGACCTTGGAGCCCTGTGTGTCCAGAGGAAGTGGAAGTGAAGGTTCCTGATAAAGTAGACTTCCTGGGAATGAACGTGGATGCTTCGGGTGCCACAGCTGGCCAGTGGATCCTGTTGGTCCTGGCTGTGCTCTTTTTGCTGACCACCATTCTTATGGCCTATAAATACAGGAAGGCAAAAAAGCCCCAAAAATCTATATCCATGATGGAGATAAAGTGAGTAGACTAGCTAGCTTCAGTGAGGCTTGTCCCACTGCGGCACCGACCTCGGCGAGAACATCGGTGTTTTTGTGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGTCCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAATGATAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTGCCAACAATTGTGAAGGCTTTTTAAAAAATGTNTTTGGATGCTTTGCATTCATGCAATTAAAAACAGTAAATATGTATTCTGCCTGCGTGTTTCAATAAAATAGAATAACAGGAAA]
[-] EMBL CA331621 [GACATTCTTGGGTGGCCTGAATACGACTGGAGACCTTGGAGCCCTGTGTGTCCAGAGGAAGTGGAAGTGAAGGTTCCTGATAAAGTAGACTTCCTGGGAATGAACGTGGATGCTTCGGGTGCCACAGCTGGCCAGTGGATCCTGTTGGTCCTGGCTGTGCTCTTTTTGCTGACCACCATTCTTATGGCCTATAAATACAGGAAGGCAAAAAAGCCCCAAAAATCTATATCCATGATGGAGATAAAGTGAGTAGACTAGCTAGCTTCAGTGAGGCTTGTCCCACTGCGGCACCGACCTCGGCGAGAACATCGGTGTTTTTGTGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGTCCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAATGATAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTGCCAACAATTGTGAAGGCTTTTTAAAAAATGTTTTTGGATGCTTTGCATTCATGCAATTAAAAACAGTAAATATGTATTCTGCCTGCGTGTTTCAATAAAATAGAATAACAGGAAA]
[+] EMBL FR0057053 [ TGTCCAGAGGAAGTGGAAGTGAAGGTTCCTGATAAAGTAGACTTCCTGGGAATGAACGTGGATGCTTCGGGTGCCACAGCTGGCCAGTGGATCCTGTTGGTCCTGGCTGTGCTCTTTTTGCTGACCACCATTCTTATGGCCTATAAATACAGGAAGGCAAAAAAGCCCCAAAAATCTATATCCATGATGGAGATAAAGTGAGTAGACTAGCTAGCTTCAGTGAGGCTTGTCCCACTGCGGCACCGACCTCGGCGAGAACATCGGTGTTTTTGTGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGTCCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAAT ATAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTGCCAACAATTGTGAAGGCTTTTT AAAAATGTNTTTGGA ]
consensusID : consensus_1591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[TGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGTCCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAATATAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTGCCAACAATTGTGAAGGCTTTTTAAAAAATGTTTTTGGATGCTTTGCATTCATGCAATTAAAAACAGTAAATATGTAAAAAAAAAAAAAAAAACCTCAAGGGGGGGCCCGGTACCCAGCTTTTGGCCCCC]
[+] EMBL FR0056627 [TGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGTCCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAATATAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTGCCAACAATTGTGAAGGCTTTTTAAAAAATGTTTTTGGATGCTTTGCATTCATGCAATTAAAAACAGTAAATATGTAAAAAAAAAAAAAAAAACCTCAAGGGGGGGCCCGGTACCCAGCTTTTGGCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1591#0 GACATTCTTGGGTGGCCTGAATACGACTGGAGACCTTGGAGCCCTGTGTGTCCAGAGGAA 60
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 GTGGAAGTGAAGGTTCCTGATAAAGTAGACTTCCTGGGAATGAACGTGGATGCTTCGGGT 120
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 GCCACAGCTGGCCAGTGGATCCTGTTGGTCCTGGCTGTGCTCTTTTTGCTGACCACCATT 180
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 CTTATGGCCTATAAATACAGGAAGGCAAAAAAGCCCCAAAAATCTATATCCATGATGGAG 240
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 ATAAAGTGAGTAGACTAGCTAGCTTCAGTGAGGCTTGTCCCACTGCGGCACCGACCTCGG 300
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 CGAGAACATCGGTGTTTTTGTGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGT 360
consensus_1591#1 --------------------TGTAATGTACAGTGTCAACAAGTGTCAGTGTCATTTTGGT 40
****************************************
consensus_1591#0 CCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAATGA 420
consensus_1591#1 CCAATTCTTTTGTCTCAATGTCAATGGCATGCACTTAAAATTTTGCCTATGCCAAAAT-A 99
********************************************************** *
consensus_1591#0 TAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTG 480
consensus_1591#1 TAGTTCTGTAATTTATTTGCAAATTTTGAGAGTAAATGTTTTAAAGGAGTGCTTGTATTG 159
************************************************************
consensus_1591#0 CCAACAATTGTGAAGGCTTTTTAAAAAATGTNTTTGGATGCTTTGCATTCATGCAATTAA 540
consensus_1591#1 CCAACAATTGTGAAGGCTTTTTAAAAAATGTTTTTGGATGCTTTGCATTCATGCAATTAA 219
******************************* ****************************
consensus_1591#0 AAACAGTAAATATGTATTCTGCCTGCGTGTTTCAATAAAATAGAATAACAGGAAA----- 595
consensus_1591#1 AAACAGTAAATATGTAAAAAAAAAAAAAAAAACCTCAAGGGGGGGC--CCGGTACCCAGC 277
**************** * ** * * ** *
consensus_1591#0 -----------
consensus_1591#1 TTTTGGCCCCC 288
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |