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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAAATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTAAACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCAAACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTCTCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGAGAGCG]
[+] EMBL CA588662 [GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAAATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTAAACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCAAACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTCTCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGAGAGCG]
consensusID : consensus_1607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 451 fasta sequence
[CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT]
[+] EMBL CA332892 [CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAAACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT]
[+] EMBL FR0058421 [ GCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1607#0 GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAA 60
consensus_1607#1 ------------------------------------------------------------
consensus_1607#0 ATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTA 120
consensus_1607#1 ------------------------------------------------------------
consensus_1607#0 AACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCA 180
consensus_1607#1 ------------------CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCC 42
* *** * ** ** *** ** * *
consensus_1607#0 AACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTT--AACAGTT 238
consensus_1607#1 AACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCT 102
*** *** ** * **** * ** * ** *
consensus_1607#0 TCTCTGACATCTAAAG---GTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCA 295
consensus_1607#1 GCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCA 162
* * ** ** * ** *************************************
consensus_1607#0 CACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACG 355
consensus_1607#1 CACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACG 222
************************************************** *******
consensus_1607#0 GAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCT 415
consensus_1607#1 GAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCT 282
******************** ***************************************
consensus_1607#0 GGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTAT 475
consensus_1607#1 GGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTAT 342
************************************************************
consensus_1607#0 GGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGC 535
consensus_1607#1 GGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGC 402
******************************* ****************************
consensus_1607#0 ACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCC 595
consensus_1607#1 ACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT----------- 451
*************************************************
consensus_1607#0 ATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTC 655
consensus_1607#1 ------------------------------------------------------------
consensus_1607#0 ACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAG 715
consensus_1607#1 ------------------------------------------------------------
consensus_1607#0 ACGGAGAGCG 725
consensus_1607#1 ----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |