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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence
[CTCCTTCGAAGAAAGTGTTTGAGGTGTTTGTTTCCAAAGTGCCCTGGACGGTTGCTGGCAGACGAGCTGAGGGAATACTTTGGACAGTTTGGATCAGTGAAGAAGTGTCTGCTGCCATTTGTTTCAACAACTGCAGCAGGACAAAGAAACTGGTTTCCATAAGGGCTTCTGCTGGGTGGGTTTTACTTCAGAGGAAGGGCTGAACAATGCTCTCCAGAAAGAGCCCCACTTGCTGGAGGGGTCCAAGTTGCAGGTACAAAGGAACCGACGTCTTTTTGTAGGACAGAAGACCAACAGAGCCTCTGAAGATGCTTGATCATTCACACGCCACCTCTTTATTTATTGTCATGATGTTGATCGTGCTGTGTGGCCTATGGACCAGCACATTCCTTCAGTAATACAGTAATGAAACCCTTGTAATATATGGTCCCCCTTCAGAAACAACATCTGCATCCTACTGTACTATAAAATGTAACTTTGGATGGCTCCTGTCCATTTCCAGAGTCTACGATCCTCTGTGTGTGGGCAAATGAACAATCTCTATTAAAGGAAGATAACT]
[+] EMBL FR0061524 [CTCCTTCGAAGAAAGTGTTTGAGGTGTTTGTTTCCAAAGTGCCCTGGACGGTTGCTGGCAGACGAGCTGAGGGAATACTTTGGACAGTTTGGATCAGTGAAGAAGTGTCTGCTGCCATTTGTTTCAACAACTGCAGCAGGACAAAGAAACTGGTTTCCATAAGGGCTTCTGCTGGGTGGGTTTTACTTCAGAGGAAGGGCTGAACAATGCTCTCCAGAAAGAGCCCCACTTGCTGGAGGGGTCCAAGTTGCAGGTACAAAGGAACCGACGTCTTTTTGTAGGACAGAAGACCAACAGAGCCTCTGAAGATGCTTGATCATTCACACGCCACCTCTTTATTTAT ]
[+] EMBL CA846707 [ GGGTCCAAGTTGCAGGTACAAAGGAACCGACGTCTTTTTGTAGGACAGAAGACCAACAGAGCCTCTGAAGATGCTTGATCATTCACACGCCACCTCTTTATTTATTGTCATGATGTTGATCGTGCTGTGTGGCCTATGGACCAGCACATTCCTTCAGTAATACAGTAATGAAACCCTTGTAATATATGGTCCCCCTTCAGAAACAACATCTGCATCCTACTGTACTATAAAATGTAACTTTGGATGGCTCCTGTCCATTTCCAGAGTCTACGATCCTCTGTGTGTGGGCAAATGAACAATCTCTATTAAAGGAAGATAACT]
consensusID : consensus_1616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[GTTTCCAAAGTGCCCTGGACGGTTGGTGGCATTTTTCTGAGGGAATACTTTGGACAGTTTGGATCAGTGAAGAAGTGTCTGCTGCCATTTGACAAAGAAACTGGTTTCCATAAGGGCTTCTGCTGGGGGGGTTTTACTTCAGAGGAAGGGGCTGACAATGCTCTCCAGAAAGAGCCCCACTTGCTGGAGGGGCCCAAGGTGCAGGTAC]
[+] EMBL FR0060718 [GTTTCCAAAGTGCCCTGGACGGTTGGTGGCATTTTTCTGAGGGAATACTTTGGACAGTTTGGATCAGTGAAGAAGTGTCTGCTGCCATTTGACAAAGAAACTGGTTTCCATAAGGGCTTCTGCTGGGGGGGTTTTACTTCAGAGGAAGGGGCTGACAATGCTCTCCAGAAAGAGCCCCACTTGCTGGAGGGGCCCAAGGTGCAGGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1616#0 CTCCTTCGAAGAAAGTGTTTGAGGTGTTTGTTTCCAAAGTGCCCTGGACGGTTGCTGGCA 60
consensus_1616#1 -----------------------------GTTTCCAAAGTGCCCTGGACGGTTGGTGGCA 31
************************* *****
consensus_1616#0 GACGAGCTGAGGGAATACTTTGGACAGTTTGGATCAGTGAAGAAGTGTCTGCTGCCATTT 120
consensus_1616#1 TTTTT-CTGAGGGAATACTTTGGACAGTTTGGATCAGTGAAGAAGTGTCTGCTGCCATTT 90
******************************************************
consensus_1616#0 GTTTCAACAACTGCAGCAGGACAAAGAAACTGGTTTCCATAAGGGCTTCTGCTGGGTGGG 180
consensus_1616#1 -------------------GACAAAGAAACTGGTTTCCATAAGGGCTTCTGCTGGGGGGG 131
************************************* ***
consensus_1616#0 TTTTACTTCAGAGGAAGGGCTGAACAATGCTCTCCAGAAAGAGCCCCACTTGCTGGAGGG 240
consensus_1616#1 TTTTACTTCAGAGGAAGGGGCTGACAATGCTCTCCAGAAAGAGCCCCACTTGCTGGAGGG 191
******************* *************************************
consensus_1616#0 GTCCAAGTTGCAGGTACAAAGGAACCGACGTCTTTTTGTAGGACAGAAGACCAACAGAGC 300
consensus_1616#1 GCCCAAGGTGCAGGTAC------------------------------------------- 208
* ***** *********
consensus_1616#0 CTCTGAAGATGCTTGATCATTCACACGCCACCTCTTTATTTATTGTCATGATGTTGATCG 360
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 TGCTGTGTGGCCTATGGACCAGCACATTCCTTCAGTAATACAGTAATGAAACCCTTGTAA 420
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 TATATGGTCCCCCTTCAGAAACAACATCTGCATCCTACTGTACTATAAAATGTAACTTTG 480
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 GATGGCTCCTGTCCATTTCCAGAGTCTACGATCCTCTGTGTGTGGGCAAATGAACAATCT 540
consensus_1616#1 ------------------------------------------------------------
consensus_1616#0 CTATTAAAGGAAGATAACT 559
consensus_1616#1 -------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |