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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[AACAGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCCTCATCAGAGTCCAGCAGGGGGGGCAGCGCTACGTCGGCCATAGAGGAGGGGATGTTGTCCTCCACCCACTTCAGATCCTCATCCACCTTGCTGGCCTTGGCGGCGCCGTTGCTCTCGTTCTTCATCCCTCTCATCTTCATCCCCTCAAAGGCCTCGTTCATCACCGCTTCCTTCTCCTCTTCCTCGCTTTCTTCGTCCAGCAGAGGGCTGAAGGCAAACCTCTGGTTATTGAAGGACGGGCGCCACAGGAACATGATGACCAGCAAGATGATGGAAAAGAGGAAGGGCCCAAAAGCGTC]
[+] EMBL CA331299 [AACAGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCCTCATCAGAGTCCAGCAGGGGGGGCAGCGCTACGTCGGCCATAGAGGAGGGGATGTTGTCCTCCACCCACTTCAGATCCTCATCCACCTTGCTGGCCTTGGCGGCGCCGTTGCTCTCGTTCTTCATCCCTCTCATCTTCATCCCCTCAAAGGCCTCGTTCATCACCGCTTCCTTCTCCTCTTCCTCGCTTTCTTCGTCCAGCAGAGGGCTGAAGGCAAACCTCTGGTTATTGAAGGACGGGCGCCACAGGAACATGATGACCAGCAAGATGATGGAAAAGAGGAAGGGCCCAAAAGCGTC]
consensusID : consensus_162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[AGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCTGGTCTCCTCATTTATGATCACTGATAAACTGTCGGGGCAGTTACGTAACCATGGCAACAGCTCAGGGCGGCGCGGGTTCTGTCGCCATCTGCTGGTCAGAATGCGAACTACAGGCAGGAAAAATGACGCGGGCACCGCCCGCGACCGCTCCAGGGATCAGGTTATTGGGGTAATGACGTCACAGTAGG]
[+] EMBL CA329478 [AGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCTGGTCTCCTCATTTATGATCACTGATAAACTGTCGGGGCAGTTACGTAACCATGGCAACAGCTCAGGGCGGCGCGGGTTCTGTCGCCATCTGCTGGTCAGAATGCGAACTACAGGCAGGAAAAATGACGCGGGCACCGCCCGCGACCGCTCCAGGGATCAGGTTATTGGGGTAATGACGTCACAGTAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_162#0 AACAGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGT 60
consensus_162#1 ---AGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGT 57
*********************************************************
consensus_162#0 TGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGT 120
consensus_162#1 TGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGT 117
************************************************************
consensus_162#0 GTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGT 180
consensus_162#1 GTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGT 177
************************************************************
consensus_162#0 CTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGT 240
consensus_162#1 CTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGT 237
************************************************************
consensus_162#0 CATGGCTTCCTCATCAGAGTCCAGCAGGGGGGGCAGCGCTACGTCGGCCATAGAGGAGGG 300
consensus_162#1 CATGGCTTCT-----GGTCTCCTCATTTATGATCACTGATA----AACTGTCGGGGCAGT 288
********* * *** * ** * ** * * * ** *
consensus_162#0 GATGTTGTCCTCCACCCACTTCAGATCCTCATCCACCTTGCTGGCCTTGGCGGCGCCGTT 360
consensus_162#1 TACGTAACCATGGCAACAGCTCAGGGCGGCGCGGGTTCTGTCGCCAT--------CTGCT 340
* ** * * ** **** * * ** * * * * * *
consensus_162#0 GCTCTCGTTCTTCATCCCTCTCATCTTCATCCCCTCAAAGGCCTCGTTCATCACCGCTTC 420
consensus_162#1 GGTCAGAATGCGAACTACAGGCAGGAAAAATGACGCG--GGCACCGCCCGCGACCGCTCC 398
* ** * * * ** * * * *** ** * ****** *
consensus_162#0 CTTCTCCTCTTCCTCGCTTTCTTCGTCCAGCAGAGGGCTGAAGGCAAACCTCTGGTTATT 480
consensus_162#1 AGGGATCAGGTTATTGGGGTAATGACGTCACAGTAGG----------------------- 435
* * * * * * *** **
consensus_162#0 GAAGGACGGGCGCCACAGGAACATGATGACCAGCAAGATGATGGAAAAGAGGAAGGGCCC 540
consensus_162#1 ------------------------------------------------------------
consensus_162#0 AAAAGCGTC 549
consensus_162#1 ---------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |