|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence
[CTGACCCTCTACCTGAACCCGCGCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACAAGACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTACTACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCTGACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCAACCCTTAAGCTAGTGGACGGGGCGGCTTTTACGGGCTGTTTTTGGGGGGTGATAACCTACTTTCTGCCTTCTGGTGTGATAAATAGTTGTTCCAACGGTATGCACTTGTTACATGCTCCAACACTGTTCTGAGCTCTAAAAATCTGGAAAAACAGGATGAAAATTATGAACAGTCACGTTTTTTTAAGGGAAAGTTGACTGCACGTGAGACCTACTTTGTACTGACGAACCAAGAGGGATGTGAACGAGGTTGTCTCTGTTACCTTTCAGGGCTTTGTGAACATGTAGGAGCCATGCTCGCCATATATACTT]
[+] EMBL CA844535 [CTGACCCTCTACCTGAACCCGCGCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACAAGACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTACTACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCTGACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCAACCCTTAACCTAGTGGATGGGGCGGCTTTTACGGACTGTTTTTGGGGGGTGATAACCTACTTTCTGCCTTCTGGTGTGATAAATAGTTGTTCCAACGGTATGCACTTGTTACATGCTCCAACACTGTTCTGAGCTCTAAAAATCTGGAAAAACAGGATGAAAATTATGAACAGTCACGTTTTTTTAAGGGAAAGTTGACTGCACGTGAGACCTACTTTGTACTGACGAACCAAGAGGGATGTGAACGAGGTTGTCTCTGTTACCTTTCAGGGCTTTGTGAACATGTAGGAGCCATGCTCGCCATATATACTT]
[+] EMBL FR0057743 [ TTTTCCACAAGTCACTACCACTCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACACGACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTACTACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCTGACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCAACCCTTAAGCTAGTGGCCGGGGCGGCTTTTACGGGCTGTTTTTGGGG ]
consensusID : consensus_1621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[ACCCTTTCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGGTATTTTTCACTTCACCACAACTGGAAACTAACACAACTCAAGTGGACCCAAATATAACCTGTTCAATGTTTCTTTGTGTTCCACCGATCGGCTTTTTGGGTTGTTATATGCGTACATGCTGGCCCTTGTTTAAAATCTTTTTTTGGGGAACTCTTGTGGAAATAGGGCACCTGCCTCATGTCGCTTTTTTCTCCTTTTAAAGTGAGTAAAGTGGCCAGATTGGTTTTAATTTATTTTACTGGTTTTAAGCAAAAACATTTTTAAACAAGTTTATTTAAGATTGCATTTTCCTTTTTTAAAAACAAATGGCTGCTTGGCTTGAATTGAGCGTTGGGCCCAGTTATAAATGAATTTAAATAATTTGTTGAAGCCCAGTTAGCTGAGTCTTTGGGGACATCTTTAGGAAT]
[+] EMBL CA340981 [ACCCTTTCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGGTATTTTTCACTTCACCACAACTGGAAACTAACACAACTCAAGTGGACCCAAATATAACCTGTTCAATGTTTCTTTGTGTTCCACCGATCGGCTTTTTGGGTTGTTATATGCGTACATGCTGGCCCTTGTTTAAAATCTTTTTTTGGGGAACTCTTGTGGAAATAGGGCACCTGCCTCATGTCGCTTTTTTCTCCTTTTAAAGTGAGTAAAGTGGCCAGATTGGTTTTAATTTATTTTACTGGTTTTAAGCAAAAACATTTTTAAACAAGTTTATTTAAGATTGCATTTTCCTTTTTTAAAAACAAATGGCTGCTTGGCTTGAATTGAGCGTTGGGCCCAGTTATAAATGAATTTAAATAATTTGTTGAAGCCCAGTTAGCTGAGTCTTTGGGGACATCTTTAGGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1621#0 CTGACCCTCTACCTGAACCCGCGCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGT 60
consensus_1621#1 ----------------ACCCTTTCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGT 44
**** *************************************
consensus_1621#0 GTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACA 120
consensus_1621#1 GTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACA 104
************************************************************
consensus_1621#0 CCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACAA 180
consensus_1621#1 CCTGGATATTTCCGTCTCCTGCAGGTAT---TTTTCACTTCACCACAACTGGAAAC-TAA 160
************************ * ** * * * ** * ** * **
consensus_1621#0 GACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTAC 240
consensus_1621#1 CACAAC----TCAAGTGGACCC---AAATATAACCTGTTCAATGTTT-----CTTTGTGT 208
** * **** ** * ** * * * ** * * **
consensus_1621#0 TACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCT 300
consensus_1621#1 TCCACCGATCGGCTTTTTG-GGTTGTTATATGCGTACATGCTGGCCCTTGTTTAAAATCT 267
* ** ** ** * ** * ***** *** ** ** ** **
consensus_1621#0 GACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCA 360
consensus_1621#1 TTTTTTGGGGAACTCTTGTGGAAATAGGG------CACCTGCCTCATGTCGCTTTTTTCT 321
* * * *** ** * *** * * ** * *****
consensus_1621#0 ACCCTTAAGCTAGTGGACGGGGCGGCTTTTACGGGCTGTTTTTGGGGGGTGATAACCTAC 420
consensus_1621#1 CCTTTTAA---AGTGAGTAAAGTGGC-----CAGATTGGTTTTAATTTATTTTA-CTGGT 372
* **** **** * *** * * ** **** * ** *
consensus_1621#0 TTTCTGCCTTCTGGTGTGATAAATAGTTGTTCCAACGGTATGCACTTGTTACATGCTCCA 480
consensus_1621#1 TTTAAGCAAAAACATTTTTAAACAAGTTTATTTAAGATTGCATTTTCCTTTTTTAAAAAC 432
*** ** * * ** **** * ** * * ** *
consensus_1621#0 ACACTGTT-CTGAGCTCTAAAAATCTGGAAAAACAGGATGAAAATTATGAACAGTCACGT 539
consensus_1621#1 AAATGGCTGCTTGGCTTGAATTGAGCGTTGGGCCCAGTTATAA---ATGAATTTAAATAA 489
* * * * ** *** ** * * * * ** ***** *
consensus_1621#0 TTTTTTAAGGGAAAGTTGACTGCACGT---GAGACCTACTTTGTACTGACGAACCAAGAG 596
consensus_1621#1 TTTGTTGAAGCCCAGTTAGCTGAGTCTTTGGGGACATCTTTAGGAAT------------- 536
*** ** * * **** *** * * *** * ** * * *
consensus_1621#0 GGATGTGAACGAGGTTGTCTCTGTTACCTTTCAGGGCTTTGTGAACATGTAGGAGCCATG 656
consensus_1621#1 ------------------------------------------------------------
consensus_1621#0 CTCGCCATATATACTT 672
consensus_1621#1 ----------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |