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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence
[ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTTTACTTTGTTTTTGTTTAAATATTTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAATTTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGACGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGAAAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTGGCTTTCGCTGTTGTGATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTTGCCGTGTGTATGGAAACACACGTTTTGTCTGTGTTATTTCTGCAAGAGAGTGTGTGTGTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAACTTCACTGCCGGCCGATATGATGGGGAGCCGGTTGTCCATGTGGGAGCTGATCAGATGACTCACGCTTTCAAACCGATGATCCTTAGTACGAACCACTCCTTCTGGATCGACGAGAAGCAGGTGCTTGGGCTGACCCCCCTGCTGCCCCGTCAGGACGTA]
[+] EMBL CA331182 [ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTTTACTTTGTTTTTGTTTAAATATTTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAATTTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGACGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGAAAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTGGCTTTCGCTGTTGTGATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTTGCCGTGTGTATGGAAACACACGTTTTGTCTGTGTTATTTCTGCAAGAGAGTGTGTGTGTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAACTTCACTGCCGGCCGATATGATGGGGAGCCGGTTGTCCATGTGGTAGCTGATCAGATGACTCACGCTTTCAAACCGATGATCCTTAGTACGAACCACTCCTTCTGGATCGACGAGAAGCAGGTGCTTGGGCTGACCCCCCTGCTGCCCCGTCAGGACGTA]
[+] EMBL CA331658 [ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTTTACTTTGTTTTTGTTTAAATATTTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAATTTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGACGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGAAAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTGGCTTTCGCTGTTGTGATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTTGCCGTGTGTATGGAAACACACGTTTTGTCTGTGTTATTTCTGCAAGAGAGTGTGTGTGTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAACTTCACTGCCGGCCGATATGATGGGGAGCCGGTTGTCCATGTGGGAGCTGATCAGATGACTCACGCTTTCAAACCGATGATCCTTAATACGAACCACTCCTTCTGGATCGACGAAAAGCAG ]
consensusID : consensus_1645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[ATATTTAAACAAAAACAAAGTAAACGATTAACAATTACAGGATGGTGTCAAATAAAAATGGACCTAAAAAAAAAAAAAAAAAGCATAAATGGGACAGAAAGAAAAGAACTTTTGCTGCATTACAGGACAAGTTCTTTCAGGCAAGGGAAGTTTTCCCTCTTCAGATTATCGCTGGAGCCTTCGAGACAAGACAAAAGTGGACGGTGGCGTTTCCGACTCATCTGGGCTGGAACATAAACTGTAGCTGCACAACCAACTCTACCGTGTCCGTCCGCCGTGTGAATATGCGTAAACAATTCTGCTTCCACTCTAATCAGAGGGGCCACCGCATCCCCACCTTTAAGGACCTTTGAACTTTGACCTCAGAGTGATACTTGAGGAAAGCCCGTATGCAATACTGGGGACTGCTATACTGTCACGTGTTTCTTTTCTCTTTGCTTTTTGACTCTTGTTGAACATTCAAAGTTGAGGAGGATCAAAACAGCTGCATATTCCTGTTTTCTCTGTGAATGCAGATACACAAACGTGCACCAAAGAACACGAAACCTGTTCAAATACAGCAAAGAAAACCAGACGCGTCTTGTGATCTAACAAGCTGAGCGGCAAAATGGGAA]
[+] EMBL BU807163 [ATATTTAAACAAAAACAAAGTAAACGATTAACAATTACAGGATGGTGTCAAATAAAAATGGACCTAAAAAAAAAAAAAAAAAGCATAAATGGGACAGAAAGAAAAGAACTTTTGCTGCATTACAGGACAAGTTCTTTCAGGCAAGGGAAGTTTTCCCTCTTCAGATTATCGCTGGAGCCTTCGAGACAAGACAAAAGTGGACGGTGGCGTTTCCGACTCATCTGGGCTGGAACATAAACTGTAGCTGCACAACCAACTCTACCGTGTCCGTCCGCCGTGTGAATATGCGTAAACAATTCTGCTTCCACTCTAATCAGAGGGGCCACCGCATCCCCACCTTTAAGGACCTTTGAACTTTGACCTCAGAGTGATACTTGAGGAAAGCCCGTATGCAATACTGGGGACTGCTATACTGTCACGTGTTTCTTTTCTCTTTGCTTTTTGACTCTTGTTGAACATTCAAAGTTGAGGAGGATCAAAACAGCTGCATATTCCTGTTTTCTCTGTGAATGCAGATACACAAACGTGCACCAAAGAACACGAAACCTGTTCAAATACAGCAAAGAAAACCAGACGCGTCTTGTGATCTAACAAGCTGAGCGGCAAAATGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1645#0 ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTT-TACTTTGTTTTTGTTTAAATAT 59
consensus_1645#1 ATATTTAAACAAAAACAAAGTA-AACGATTAACAATTACAGGATGGTGTCAAATAAAAAT 59
** **** * * ** * ** **** ** * ** * * **** **
consensus_1645#0 TTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAAT 119
consensus_1645#1 GGACCTAAAAA---------AAAAAAAAAAAAGCATAAATGGGACAGAAAGAAAAGAACT 110
* * ** * **** * * * ** *
consensus_1645#0 TTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGA 179
consensus_1645#1 TTTGCTGCATTACAGGACAAGTTCTTTCAGGCAAGGGAAGTTTTCCCTCT---------- 160
** * * * **** * * * * * * *** *
consensus_1645#0 CGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGA 239
consensus_1645#1 ----TCAGATTATCGCTG-GAGCCTTCGAGACAAGACAAAAGTGGACGGTGGCGTTTCCG 215
* **** * ** * * * * * ** * ** *** * **
consensus_1645#0 AAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTG 299
consensus_1645#1 ACTCATCTGGGCTGG-AACAT--AAACTGTAGCTGCACAACCAACTCTACCGTGTCCGTC 272
* * ** ** * * ** * * ** * ** ** ** * *
consensus_1645#0 GCTTTCGCTGTTGTG-ATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTT 358
consensus_1645#1 CGCCGTGTGAATATGCGTAAACAATTCTGCTTCCACTCTAATCAGAGGGGCCACCGCATC 332
* * ** * * ** ** * * **** * *
consensus_1645#0 GCCGTGTGTATGGAAACACACGTTTTG---TCTGTGTTATTTCTGCAAGAGAGTGTGTGT 415
consensus_1645#1 CCCACCTTTAAGGACCTTTGAACTTTGACCTCAGAGTGATACTTG-AGGAAAGCCCGTAT 391
** * ** *** **** ** * ** ** ** * ** ** ** *
consensus_1645#0 GTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAAC 475
consensus_1645#1 GCAATACTGGGGACTGCTATACTGTCACGTGTTTCTTTTCTCTTTGCTTTTTGACTCTTG 451
* ** * * * * **** * * * * * ****
consensus_1645#0 TTCACTGCCGGCCGATATGATGGG--GAGCCGGTTGTCCATGTGGGAGCTGATCAGATGA 533
consensus_1645#1 TTGAACATTCAAAGTTGAGGAGGATCAAAACAGCTGCATATTCCTGTTTTC-TCTGTGAA 510
** * * * * ** * * * ** ** * * ** * *
consensus_1645#0 CTCACGCTTTCAAACCGATGATCCTTAGTACGAA-CCACTCCTTCTGGATCGACGAGAAG 592
consensus_1645#1 TGCAGATACACAAACGTGCACCAAAGAACACGAAACCTGTTCAAATACAGCAAAGAAAAC 570
** ***** * ***** ** * * * * * * ** **
consensus_1645#0 CAGGTGCTTGGGCTGACCCCCCTGCTGCCCCGTCAGGACGTA-- 634
consensus_1645#1 CAGACGCGTCTTGTGATCTAACAAGCTGAGCGGCAAAATGGGAA 614
*** ** * *** * * ** ** * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |