Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1652 cluster # 1652       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1652#0 length = 413 sequences # 2  
 consensus_1652#1 length = 305 sequences # 1  
consensusID : consensus_1652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 413
fasta sequence 
                              [TTTTTGATGGGGAGAAGGTTCAACACAGAACCCCATTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCATGCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATAGGCAGCAACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCCGGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA]

[+] EMBL CA331142             [TTTTTGATGGGGAGAAGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCATGCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGTCACATAGTCAGCAACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCCGGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA]
[+] EMBL CA329636             [         GGGAGAAGGTTCAACTTTTTTCCCCCTTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCATGCACTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATTGGTAGTTACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCCGGAGGCGATGACGTGCCCGATATGTCCAGAGATCACCTG ]




>consensus_1652#0
TTTTTGATGGGGAGAAGGTTCAACACAGAACCCCATTAAAGCTCTTTTCCCGTGATACAA
ATGTTAAAACAGCATGCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACAC
TGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGT
GACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATAGGCAGC
AACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGAT
GCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCT
CGCTCACACCGCCGGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA

consensusID : consensus_1652#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence 
                              [GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGAAGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCATGCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGTGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCACTCGTACTCACACATGGATGCAAACCTGGGTGGAAAAAGTAGCTGGAGAAGGACGGACTGAAGGCA]

[-] EMBL FR0057957            [GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGAAGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCATGCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGTGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCACTCGTACTCACACATGGATGCAAACCTGGGTGGAAAAAGTAGCTGGAGAAGGACGGACTGAAGGCA]




>consensus_1652#1
GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGA
AGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCAT
GCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAG
TGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCAC
TCGTACTCACACATGGATGCAAACCTGGGTGGAAAAAGTAGCTGGAGAAGGACGGACTGA
AGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1652#0      ---------------------------------------------TTTTTGATGGGGAGA 15
consensus_1652#1      GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGA 60
                                                                       ****** ****

consensus_1652#0      AGGTTCAACACAGAACCCCATTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCAT 75
consensus_1652#1      AGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCAT 120
                      ****************   ********************* *******************

consensus_1652#0      GCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAG 135
consensus_1652#1      GCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAG 180
                      ******** **** **********************************************

consensus_1652#0      CA--GAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCC 193
consensus_1652#1      TGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCAC 240
                          *** **    * *   **        ** *    * * * * * *     *  * *

consensus_1652#0      CCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATAGGCAGCAACTATGAAGCAG 253
consensus_1652#1      TCGTACTCACACATG------GATGCAAACCTGG--GTGGAAAAAGTAGCTG-GAGAAGG 291
                       * * * ** * * *       *   ** **  *      *   ** * **  **    *

consensus_1652#0      ACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAG 313
consensus_1652#1      ACGGACTGAAGGCA---------------------------------------------- 305
                      ***   * **  **                                              

consensus_1652#0      AGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCC 373
consensus_1652#1      ------------------------------------------------------------
                                                                                  

consensus_1652#0      GGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA 413
consensus_1652#1      ----------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)