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Takifugu rubripes
cluster # 1658 cluster # 1658       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1658#0 length = 352 sequences # 2  
 consensus_1658#1 length = 295 sequences # 1  
consensusID : consensus_1658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence 
                              [TTCGTTTGCTGTGCTTGTTGACGGTGTTGGGGTGCGGGTGTCCGCTGGACTCCGGCATGCTGTTCCCCCGGGAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCAGGGCCGACATGTCCCCGAACAGGAATCAGGGCTTCGAGAGAGCGTGGTACAAAGCCCGTCTGGAGGAGAGCGGCCCTGTGGTGGACATGCCCGTCCCTGCCAGCTACAACGACATCACGCAGGACTCCAGCTTGAGGGACTTCATCGGCTGGGNGTGGTATGAGCGGGAGGTGCTGGTGCCGGCCCGCTGGGTCGCCGGTGATGGGACCCGACTGGTCCTCCCGGGGGGAAG]

[+] EMBL FR0062570            [TTCGTTTGCTGTGCTTGTTGACGGTGTTGGGGTGCGGGTGTCCCCTGGACTCCGGCATGCTGTTCCCCCGGGAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCAGGGCCGACATGTCCCCGAACAGGAATCAGGGCTTCGAGAGAGCGTGGTACAAAGCCCGTCTGGAGGAGAGCGGCCCTGTGGTGGACATGCCCGTCCCTGCCAGCTACAACGACATCACGCAGGACTCCAGCTTGAGGGACTTCATCGGCTGGG                                                                               ]
[+] EMBL FR0059756            [               TGTTGACGGTGTTGGGGTGCGGGTGTCCGCTGGACTCCGGCATGCTGTTCCCCCGGGAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCAGGGCCGACATGTCCCCGAACAGGAATCAGGGCTTCGAGAGAGCGTGGTACAAAGCCCGTCTGGAGGAGAGCGGCCCTGTGGTGGACATGCCCGTCCCTGCCAGCTACAACGACATCACGCAGGACTCCAGCTTGAGGGACTTCATCGGCTGGGNGTGGTATGAGCGGGAGGTGCTGGTGCCGGCCCGCTGGGTCGCCGGTGATGGGACCCGACTGGTCCTCCCGGGGGGAAG]




>consensus_1658#0
TTCGTTTGCTGTGCTTGTTGACGGTGTTGGGGTGCGGGTGTCCGCTGGACTCCGGCATGC
TGTTCCCCCGGGAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCA
GGGCCGACATGTCCCCGAACAGGAATCAGGGCTTCGAGAGAGCGTGGTACAAAGCCCGTC
TGGAGGAGAGCGGCCCTGTGGTGGACATGCCCGTCCCTGCCAGCTACAACGACATCACGC
AGGACTCCAGCTTGAGGGACTTCATCGGCTGGGNGTGGTATGAGCGGGAGGTGCTGGTGC
CGGCCCGCTGGGTCGCCGGTGATGGGACCCGACTGGTCCTCCCGGGGGGAAG

consensusID : consensus_1658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence 
                              [GGGGCTGGGCGTGCTCTCTCCCCTTGACTCCGCCATGCTGTTCCCCCGAAAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCAGGGCCGACATGTCCCCGAACAGGAATCAGGTCTTCGAGAGAGCGTGGTACAAAGCCCGTCTGGAGGAGAGCGGCCCTGTGGGGTACATGCCCGTGCCTGCCAGCTACAACGACATCACGCAGGACTCCAGCTTGAGGGACTTCATCGGCTTGGTGTGGTATGAGCGAAAGGTGCTGGCGCCGCCCCCGCTGTTCGCC]

[+] EMBL FR0061044            [GGGGCTGGGCGTGCTCTCTCCCCTTGACTCCGCCATGCTGTTCCCCCGAAAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCAGGGCCGACATGTCCCCGAACAGGAATCAGGTCTTCGAGAGAGCGTGGTACAAAGCCCGTCTGGAGGAGAGCGGCCCTGTGGGGTACATGCCCGTGCCTGCCAGCTACAACGACATCACGCAGGACTCCAGCTTGAGGGACTTCATCGGCTTGGTGTGGTATGAGCGAAAGGTGCTGGCGCCGCCCCCGCTGTTCGCC]




>consensus_1658#1
GGGGCTGGGCGTGCTCTCTCCCCTTGACTCCGCCATGCTGTTCCCCCGAAAGACCTCCTC
CAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTCAGGGCCGACATGTCCCCGAACAG
GAATCAGGTCTTCGAGAGAGCGTGGTACAAAGCCCGTCTGGAGGAGAGCGGCCCTGTGGG
GTACATGCCCGTGCCTGCCAGCTACAACGACATCACGCAGGACTCCAGCTTGAGGGACTT
CATCGGCTTGGTGTGGTATGAGCGAAAGGTGCTGGCGCCGCCCCCGCTGTTCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1658#0      TTCGTTTGCTGTGCTTGTTGACGGTGTTGGG-GTGCGGGTGTCCGCTGGACTCCGGCATG 59
consensus_1658#1      ----------------------GGGGCTGGGCGTGCTC-TCTCCCCTTGACTCCGCCATG 37
                                            ** * **** ****   * *** ** ******* ****

consensus_1658#0      CTGTTCCCCCGGGAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTC 119
consensus_1658#1      CTGTTCCCCCGAAAGACCTCCTCCAGGGAGGTGAAGGAGCTGAACGGCCTGTGGAAGTTC 97
                      ***********  ***********************************************

consensus_1658#0      AGGGCCGACATGTCCCCGAACAGGAATCAGGGCTTCGAGAGAGCGTGGTACAAAGCCCGT 179
consensus_1658#1      AGGGCCGACATGTCCCCGAACAGGAATCAGGTCTTCGAGAGAGCGTGGTACAAAGCCCGT 157
                      ******************************* ****************************

consensus_1658#0      CTGGAGGAGAGCGGCCCTGTGGTGGACATGCCCGTCCCTGCCAGCTACAACGACATCACG 239
consensus_1658#1      CTGGAGGAGAGCGGCCCTGTGGGGTACATGCCCGTGCCTGCCAGCTACAACGACATCACG 217
                      ********************** * ********** ************************

consensus_1658#0      CAGGACTCCAGCTTGAGGGACTTCATCGGCTGGGNGTGGTATGAGCGGGAGGTGCTGGTG 299
consensus_1658#1      CAGGACTCCAGCTTGAGGGACTTCATCGGCTTGGTGTGGTATGAGCGAAAGGTGCTGGCG 277
                      ******************************* ** ************  ********* *

consensus_1658#0      CCGGCCCGCTGGGTCGCCGGTGATGGGACCCGACTGGTCCTCCCGGGGGGAAG 352
consensus_1658#1      CCGCCCCCGCTGTTCGCC----------------------------------- 295
                      *** ***    * *****


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)