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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence
[ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAGCAGTGGTGATCCAGGTT]
[+] EMBL CA329703 [ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAGCAGTGGTGATCCAGGTT]
[-] EMBL FR0056448 [ TCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTA ]
consensusID : consensus_1671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGAACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTGCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATCCAGGTT]
[+] EMBL CA329581 [AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGAACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTGCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATCCAGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1671#0 ---ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATA 57
consensus_1671#1 AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATA 60
******************** ******************* **************
consensus_1671#0 TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAA 117
consensus_1671#1 TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGA 120
************************************************** ******* *
consensus_1671#0 ACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA 177
consensus_1671#1 ACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA 180
******* ************ ***************************************
consensus_1671#0 CCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGC 237
consensus_1671#1 CCCGTCACACC--CCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGC 238
******* * **** ************* ************* * ******
consensus_1671#0 TGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCG 297
consensus_1671#1 TGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTG 298
******* *************************** ****** ***** *** *
consensus_1671#0 TTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGAC 357
consensus_1671#1 T------GCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGC 352
* *********************** * ****** *********** ***** *
consensus_1671#0 CCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCC 417
consensus_1671#1 CCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCG 412
********* ******************* * ** ** ** ******************
consensus_1671#0 TCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCG 477
consensus_1671#1 TCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCG 472
******* ******************************** ******* ***********
consensus_1671#0 TTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGG 537
consensus_1671#1 TTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGG------GGGGG 526
********* ************** *** ****************** * *****
consensus_1671#0 CAGCAGTGGTGATCCAGGTT 557
consensus_1671#1 CAGCAGTGGTGATCCAGGTT 546
********************
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |