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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence
[CCCCGACTGGATTTTTGGGAGTCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGAGAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCACCGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGATGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAATGCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTCAGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCTGCTGGACCTGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACTCCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCCCCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAACATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAAGGCCACTTTCCANGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAAC]
[+] EMBL CA333235 [CCCCGACTGGATTTTTGGGAGTCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGAGAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCACCGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGATGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAATGCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTCAGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCTGCTGGACCTGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACTCCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCCCCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAACATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAAGGCCACTTTTCAGGGCATGTCCAACATCATC ]
[+] EMBL CA330973 [ TCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGAGAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCACCGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGATGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAATGCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTCAGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCTGCTGGACCTGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACTCCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCCCCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAACATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAAGGCCACTTTCCANGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAAC]
consensusID : consensus_1678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[GAGCTGACATCCATGACAATGCCATCACCAGGAGCAAAAAGGCCACTTTCCAGGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAACCCTCTGAACAGGGCAGGAATCGACGAAGGCGCTTTTGCCGACCTGAAGAGGGTCTCTTACATCCGAATTGCAGATACCAACATTACAGAGATACCCAAAGGTCTGCCTAGGCTCTCTCTCTGAGCTCCATCTGGATGCAAACAAAATCACCAAGGTGACGGCTGCCAGTGTCCAGGGTCTGAAGAACCTGGCCAAACTTGGCCTGAGCGACAATGACATCAGCTCTGTGGAAAATGGCACAATGGCTAATGTTCCCCACCTGCGGGACGTGCACCTCGACAACAACGCTCTGACTAGCGTTCCTTCTGG]
[+] EMBL FR0062965 [GAGCTGACATCCATGACAATGCCATCACCAGGAGCAAAAAGGCCACTTTCCAGGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAACCCTCTGAACAGGGCAGGAATCGACGAAGGCGCTTTTGCCGACCTGAAGAGGGTCTCTTACATCCGAATTGCAGATACCAACATTACAGAGATACCCAAAGGTCTGCCTAGGCTCTCTCTCTGAGCTCCATCTGGATGCAAACAAAATCACCAAGGTGACGGCTGCCAGTGTCCAGGGTCTGAAGAACCTGGCCAAACTTGGCCTGAGCGACAATGACATCAGCTCTGTGGAAAATGGCACAATGGCTAATGTTCCCCACCTGCGGGACGTGCACCTCGACAACAACGCTCTGACTAGCGTTCCTTCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1678#0 CCCCGACTGGATTTTTGGGAGTCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGA 60
consensus_1678#1 ------------------------------------------------------------
consensus_1678#0 GAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCAC 120
consensus_1678#1 ------------------------------------------------------------
consensus_1678#0 CGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGA 180
consensus_1678#1 GAGCTGACATCCATGACAATGCCATCA--CCAGGAGCAAAAAGGCCACTTTCCAGGGC-A 57
*** * * * ** ** ** * * * * ** * *** * *
consensus_1678#0 TGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAAT 240
consensus_1678#1 TGTCCAACATCATCGTCATGGAG----CTTGGCTCCAACCCTCTGAACAGGGCAGGAATC 113
** * * * ** * * * **** ** *** * * *
consensus_1678#0 GCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTC 300
consensus_1678#1 GACGAAGGCGCTTTTGCCGACCTGAAGA-----GGGTCTCTTA-----CATCCGAATTGC 163
* * * * *** *** * * * * * *** * *
consensus_1678#0 AGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCT-GCTGGACC 359
consensus_1678#1 AGATACCAACATTACAGAGATACCCAAAGGTCTGCCTAGGCTCTCTCTCTGAGCTCCATC 223
*** * * * ** * ** * * * * ** ** ** *** * *
consensus_1678#0 TGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACT-- 417
consensus_1678#1 TGGATGCAAACAAAATCACCAAGGTGACGGCTGCCAGTGTCCAGGGTCTGAAGAACCTGG 283
** * ***** ** * * * * ** * ** ** ** *** **
consensus_1678#0 CCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCC 477
consensus_1678#1 CCAAACTTGG--CCTGAGCGACAATGACATCAGCTCTGTGGAAAATGGCACAATGGCTAA 341
******* * **** **** * ****** * * * ** * *
consensus_1678#0 CCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAA 537
consensus_1678#1 TGTTCCCCACCTGCGGGACGTGCACCTCGACAACAACGCTCTGACTAGCGTTCCTTCTGG 401
* ** * **** * * **** ** ** ** ** * * * ** *
consensus_1678#0 CATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAA 597
consensus_1678#1 ------------------------------------------------------------
consensus_1678#0 GGCCACTTTCCANGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAAC 649
consensus_1678#1 ----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |