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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence
[ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAACTGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAAAACCACA]
[+] EMBL CA588531 [ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTCTTGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGG AAAAACTGAAGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACATAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAAAACCACA]
[+] EMBL FR0058805 [ ATGTCAGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAACTGAAGGGCAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAA ]
consensusID : consensus_1686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACGAAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACAGAGAAAA]
[+] EMBL FR0058575 [ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACGAAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACAGAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1686#0 ------------------------------------------------------------
consensus_1686#1 ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACG 60
consensus_1686#0 ------------------------ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTC 36
consensus_1686#1 AAAAAAAAAAAAATCATTTTGCTGGCTGATCGC-AATCATTCAAATTCCGAA--GATGTC 117
** ** * *** * ** ******
consensus_1686#0 AGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAA 96
consensus_1686#1 AGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAA 177
***************** * ************************ ******** ******
consensus_1686#0 TCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCC 156
consensus_1686#1 TCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCC 237
********* **************************************************
consensus_1686#0 TAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGT 216
consensus_1686#1 TAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGC 297
********************************************* ** **********
consensus_1686#0 TTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACC 276
consensus_1686#1 TTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACC 357
************ ** ********************************************
consensus_1686#0 ATTAAAAGCTTTTGGGGAAAAAACTGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACC 336
consensus_1686#1 ATTAAAAGCTTTTGTGGAAAAA-CTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACC 416
************** ******* **** ** *****************************
consensus_1686#0 CAGTCCAGGTGACAGAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAA 396
consensus_1686#1 CAGTCCAGTTGACAGAGAAAA--------------------------------------- 437
******** ************
consensus_1686#0 CAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCC 456
consensus_1686#1 ------------------------------------------------------------
consensus_1686#0 AACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGG 516
consensus_1686#1 ------------------------------------------------------------
consensus_1686#0 CCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGC 576
consensus_1686#1 ------------------------------------------------------------
consensus_1686#0 AGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCA 636
consensus_1686#1 ------------------------------------------------------------
consensus_1686#0 GCATTAAAATGATGGTGTATGGAAAACCACA 667
consensus_1686#1 -------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |