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Takifugu rubripes
cluster # 1710 cluster # 1710       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1710#0 length = 489 sequences # 1  
 consensus_1710#1 length = 343 sequences # 2  
consensusID : consensus_1710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence 
                              [TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGACCATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATAGATTTCAGCGCTCTCTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCAGAGAAGCTGGGCATCCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCGGACTCTTTGGGAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCTTCCGCTGGTCTTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGAACTAAAACG]

[+] EMBL CA591258             [TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGACCATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATAGATTTCAGCGCTCTCTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCAGAGAAGCTGGGCATCCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCGGACTCTTTGGGAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCTTCCGCTGGTCTTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGAACTAAAACG]




>consensus_1710#0
TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGAC
CATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGAC
TGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCA
TTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATAGAT
TTCAGCGCTCTCTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCA
GAGAAGCTGGGCATCCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCG
GACTCTTTGGGAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCT
TCCGCTGGTCTTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGA
ACTAAAACG

consensusID : consensus_1710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 343
fasta sequence 
                              [CCATCTCAACTGACTTTTGCAGAGCGACCATGATCTGGTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCGGCTCTGGAAAAGTTTCTGTCAGAGATTTCAGCGCTCTCTTCAAAGATAACTCTTATCAGAACAACCAGTTGGAATTCGAGACTGCAGAGAAGCTGGGCATTCCCTGCGCTAC]

[+] EMBL FR0058324            [CCATCTCAACTGACTTTTGCAGAGCGACCATGATCTGGTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCTGCTTTGGAAAAGTTTCTGTCAGAGATTTCAGCGCTCTCTTCAAAGATAACTCTTATCAGAACAACCAGTTGGAATTCGAGACTGCAGAGAAGCTGGGCATTCCCTGCGCTAC]
[+] EMBL FR0058323            [      CAACTGATTTTTGCAGAGCGACCATGATCTGCTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCGGCTCTGGAAAAGTTTCTGTCAGA                                                                                         ]




>consensus_1710#1
CCATCTCAACTGACTTTTGCAGAGCGACCATGATCTGGTGGGCCTCATCACAGATGTAGA
GATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGA
TGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCAT
CCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCGGCTCTGGAA
AAGTTTCTGTCAGAGATTTCAGCGCTCTCTTCAAAGATAACTCTTATCAGAACAACCAGT
TGGAATTCGAGACTGCAGAGAAGCTGGGCATTCCCTGCGCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1710#0      TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGAC 60
consensus_1710#1      --------------------------------CCATCTCAACTGACTTTTGCAGAGCGAC 28
                                                      ******** ***** *************

consensus_1710#0      CATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGAC 120
consensus_1710#1      CATGATCTGGTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGAC 88
                      ********* *** ************************ *********************

consensus_1710#0      TGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCA 180
consensus_1710#1      TGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCA 148
                      ************************************************************

consensus_1710#0      TTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGAT---- 236
consensus_1710#1      TTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGA 208
                      ********************************************************    

consensus_1710#0      ---------------------------------------------AGATTTCAGCGCTCT 251
consensus_1710#1      GTAAAGATTCGGTTTAAGATTCGGCTCTGGAAAAGTTTCTGTCAGAGATTTCAGCGCTCT 268
                                                                   ***************

consensus_1710#0      CTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCAGAGAAGCTGGG 311
consensus_1710#1      CTTCAAAGATAACTCTTATCAGAACAACCAGTTGGAATTCGAGACTGCAGAGAAGCTGGG 328
                      ** ******************************** ************************

consensus_1710#0      CAT-CCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCGGACTCTTTGG 370
consensus_1710#1      CATTCCCTGCGCTAC--------------------------------------------- 343
                      *** ***********                                             

consensus_1710#0      GAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCTTCCGCTGGTC 430
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      TTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGAACTAAAACG 489
consensus_1710#1      -----------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)