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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence
[GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGCATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN]
[+] EMBL FR0058362 [GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATCAGCTGTTAGTTAAAGGACGACGGGAGCATTCAC ]
[+] EMBL CA588258 [ AGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATTTTTTGGAAGTTAAAGGACGACGGTAGTATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN]
consensusID : consensus_1736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATTTGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATAAATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTAACTGTTGGGACAGTGACCTGCG]
[+] EMBL FR0058151 [TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATTTGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATAAATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTAACTGTTGGGACAGTGACCTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1736#0 ---------GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATT 51
consensus_1736#1 TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATT 60
******************************** ****************
consensus_1736#0 TGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA 111
consensus_1736#1 TGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA 120
************** *********************************************
consensus_1736#0 ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG 171
consensus_1736#1 ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG 180
************************************************************
consensus_1736#0 CAGGGTTTACAGTGTATCACTTCCACAACTAACT--GTTGGGACAGTGACCTGCGTCCTC 229
consensus_1736#1 CAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATA 240
**************************** * * * * *** * * * *** *
consensus_1736#0 ACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACA 289
consensus_1736#1 AATATGTAGGACCAAGTCTTCCANAG----TGTGTGCGTCTGTGCGTGT---GTGTGTCT 293
* * ** *** **** ** * ** * ***** * * * * *
consensus_1736#0 GGAGAAGACAACTGCAGCC-TGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGC 348
consensus_1736#1 GTAGCTAACTGTTGGGACAGTGACCTGCG------------------------------- 322
* ** ** ** * ** * ***
consensus_1736#0 ATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTG 408
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 TGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGG 468
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 TCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAAC 528
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 ATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCT 588
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 GGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN 645
consensus_1736#1 ---------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |