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Takifugu rubripes
cluster # 1739 cluster # 1739       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1739#0 length = 472 sequences # 2  
 consensus_1739#1 length = 390 sequences # 1  
consensusID : consensus_1739#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence 
                              [AGAAGAACCGAAGCGCCGCCGGGAACCGTGATGATGCTGACCAGGAAAAGAAAACTTCCATCGTTTAATGACAGTTTTGACCATTTTAACTCCAGTCCAGCAAAGACGGGAGTGGGCTCAGAGATGTCCCCCCAGAGGACGAGCTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAGAATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCCAATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTTAACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCTCTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGTGGGACGAACCAAGGCAGCTGCCAGATCTAAGGGGACGGGAATCCACCGGTGGACAACTTCAGGAA]

[+] EMBL CA590271             [AGAAGAACCGAAGCGCCGCCGGGAACCGTGATGATGCTGACCAGGAAAAGAAAACTTCCATCGTTTAATGACAGTTTTGACCATTTTAACTCCAGTCCAGCAAAGACGGGAGTGGGCTCAGAGATGTCCCCCCAGAGGACGAGTTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAGAATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCCAATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTTAACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCTCTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGG                                                                      ]
[+] EMBL FR0061034            [                                                                                                                 GGGCTCAGAGATGTCCCCCCAGAGGACGAGCTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAGAATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCCAATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTTAACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCTCTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGTGGGACGAACCAAGGCAGCTGCCAGATCTAAGGGGACGGGAATCCACCGGTGGACAACTTCAGGAA]




>consensus_1739#0
AGAAGAACCGAAGCGCCGCCGGGAACCGTGATGATGCTGACCAGGAAAAGAAAACTTCCA
TCGTTTAATGACAGTTTTGACCATTTTAACTCCAGTCCAGCAAAGACGGGAGTGGGCTCA
GAGATGTCCCCCCAGAGGACGAGCTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAG
AATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCC
AATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTT
AACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCT
CTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGTGGGACGAACCAAG
GCAGCTGCCAGATCTAAGGGGACGGGAATCCACCGGTGGACAACTTCAGGAA

consensusID : consensus_1739#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence 
                              [GTGATGATGCTGACCAGGAAAAGAAAACTTCCATCGTTTAATGACAGTCCAGCAAAGACGGGAGTGGGCTCAGAGATGTCCCCCCAGAGGACGAGTTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAGAATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCCAATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTTAACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCTCTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGGGGGACGAACCAAGGCAGCTGCCAGATCTAAG]

[+] EMBL FR0058449            [GTGATGATGCTGACCAGGAAAAGAAAACTTCCATCGTTTAATGACAGTCCAGCAAAGACGGGAGTGGGCTCAGAGATGTCCCCCCAGAGGACGAGTTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAGAATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCCAATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTTAACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCTCTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGGGGGACGAACCAAGGCAGCTGCCAGATCTAAG]




>consensus_1739#1
GTGATGATGCTGACCAGGAAAAGAAAACTTCCATCGTTTAATGACAGTCCAGCAAAGACG
GGAGTGGGCTCAGAGATGTCCCCCCAGAGGACGAGTTCCCCCACAAAGAACCAAGTTGGG
AGTCAAAACAAGAATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCA
GTTACATCACCCAATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGC
AAGCGGAAGGTTAACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCAT
CCTCCTTCCTCTCTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGGG
GGACGAACCAAGGCAGCTGCCAGATCTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1739#0      AGAAGAACCGAAGCGCCGCCGGGAACCGTGATGATGCTGACCAGGAAAAGAAAACTTCCA 60
consensus_1739#1      ---------------------------GTGATGATGCTGACCAGGAAAAGAAAACTTCCA 33
                                                 *********************************

consensus_1739#0      TCGTTTAATGACAGTTTTGACCATTTTAACTCCAGTCCAGCAAAGACGGGAGTGGGCTCA 120
consensus_1739#1      TCGTTTAATGACAGT---------------------CCAGCAAAGACGGGAGTGGGCTCA 72
                      ***************                     ************************

consensus_1739#0      GAGATGTCCCCCCAGAGGACGAGCTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAG 180
consensus_1739#1      GAGATGTCCCCCCAGAGGACGAGTTCCCCCACAAAGAACCAAGTTGGGAGTCAAAACAAG 132
                      *********************** ************************************

consensus_1739#0      AATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCC 240
consensus_1739#1      AATGTTCATTCCCTACAGGAAAGCCCATGTTGGATAACAGTTTCTCCAGTTACATCACCC 192
                      ************************************************************

consensus_1739#0      AATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTT 300
consensus_1739#1      AATAAATCGCCATTCAAAAAATCCATTATGTCAAATTCCTTCTATGGCAAGCGGAAGGTT 252
                      ************************************************************

consensus_1739#0      AACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCT 360
consensus_1739#1      AACTACCTCACCCCATTGGAAAGAAAGGCCATCAAGGAGTCTTTGCATCCTCCTTCCTCT 312
                      ************************************************************

consensus_1739#0      CTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGTGGGACGAACCAAG 420
consensus_1739#1      CTTCCACCTCCACAAGAGAAAAAGAAGCCAAAAATGAAGAGGGGGGGGGGACGAACCAAG 372
                      ********************************************** *************

consensus_1739#0      GCAGCTGCCAGATCTAAGGGGACGGGAATCCACCGGTGGACAACTTCAGGAA 472
consensus_1739#1      GCAGCTGCCAGATCTAAG---------------------------------- 390
                      ******************


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)