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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC]
[+] EMBL FR0058512 [AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTACAGC ]
[+] EMBL CA590295 [ GACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACA GAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC]
consensusID : consensus_1795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTTTGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTAGCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTTACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCAGCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAA]
[+] EMBL CA333305 [TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTTTGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTAGCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTTACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCAGCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1795#0 ------------------------------------------------------------
consensus_1795#1 TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTT 60
consensus_1795#0 ------------------------------------------------------------
consensus_1795#1 TGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTA 120
consensus_1795#0 ------------------------------------------------------------
consensus_1795#1 GCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTT 180
consensus_1795#0 ----------------------------AATAATCAGGTTTTCTGCGCGACATACGTGCT 32
consensus_1795#1 ACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCA 240
* * * * * ** ** * *
consensus_1795#0 G--GATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC 90
consensus_1795#1 GCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC 300
* *** ****************************************************
consensus_1795#0 TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG 150
consensus_1795#1 TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG 360
************************************************************
consensus_1795#0 AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG 210
consensus_1795#1 AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG 420
************************************************************
consensus_1795#0 GAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCC 270
consensus_1795#1 GAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCC 480
****************************** *****************************
consensus_1795#0 TATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTA 330
consensus_1795#1 TATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAG-AGACCGCGACTGGCACCACTA 539
************** *********************** *********************
consensus_1795#0 CAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCA 390
consensus_1795#1 CAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCA 599
************************************************************
consensus_1795#0 CAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCG 450
consensus_1795#1 CAGAGACAGGAAGCAGCAA----------------------------------------- 618
*******************
consensus_1795#0 TCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCAT 510
consensus_1795#1 ------------------------------------------------------------
consensus_1795#0 CTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGG 570
consensus_1795#1 ------------------------------------------------------------
consensus_1795#0 TGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCT 630
consensus_1795#1 ------------------------------------------------------------
consensus_1795#0 GAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCT 690
consensus_1795#1 ------------------------------------------------------------
consensus_1795#0 GGAGCAGCTGAAAGCTCTC 709
consensus_1795#1 -------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |