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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence
[GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGGAGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAAGCTCAAC]
[+] EMBL BU806081 [GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCTCTTCTGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAAAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGAATCAGAAGGAAGAGGGAAGTTGt ]
[+] EMBL CA588913 [ CGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGACATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGACGTGGGAGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAAGCTCAAC]
consensusID : consensus_1854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATAAATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAGATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAATTTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGACATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT]
[+] EMBL CA590721 [ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATAAATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAGATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAATTTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGACATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1854#0 ------------------------------------------------------------
consensus_1854#1 ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATA 60
consensus_1854#0 ------------------------------------GGGTGCCGAAGCCGCAAACAGGCC 24
consensus_1854#1 AATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCC 120
************************
consensus_1854#0 TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA 84
consensus_1854#1 TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA 180
************************************************************
consensus_1854#0 CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA 144
consensus_1854#1 CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA 240
************************************************************
consensus_1854#0 AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT 204
consensus_1854#1 AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT 300
************************************************************
consensus_1854#0 CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA 264
consensus_1854#1 CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA 360
************************************************************
consensus_1854#0 TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGT 324
consensus_1854#1 TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTA---- 416
***************************************************** *
consensus_1854#0 CGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTA 384
consensus_1854#1 ---------GGAGATGGTTTCATTTCTTTCAGGCACT--TTAAATGACACTTGATTGCTT 465
** **** * * * * * * * * * *** * **
consensus_1854#0 TCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATT 444
consensus_1854#1 TTAT----TTGTTGGTAATTT--TCCTGCTTATTTGT--------CTTTCCGAGAGGACT 511
* * **** * ** ** ** **** ** ** * * **** *
consensus_1854#0 TGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCA 504
consensus_1854#1 T--TGATGGACCCCGC----TCCTGAATGAGCCGA--CATCAGACATCCGGT-CCGATTT 562
* * ** ** * * *** * * * ** *** * *** * *
consensus_1854#0 AGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGGAGCCGGTGACCAGGGGCTGATGTT 564
consensus_1854#1 ATCTTTTCTTTAGGAAAAT----------------------------------------- 581
* * *** ***
consensus_1854#0 CGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAA 624
consensus_1854#1 ------------------------------------------------------------
consensus_1854#0 GCTCAAC 631
consensus_1854#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |