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Takifugu rubripes
cluster # 1888 cluster # 1888       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1888#0 length = 409 sequences # 1  
 consensus_1888#1 length = 336 sequences # 2  
consensusID : consensus_1888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence 
                              [CAAAGGAGTCTTCGGAGCGTCATTCTGGCAAAAAGGCGAGTTCTAGGCCTGATTCAGAATGGATTCCACTTTGACTGCAGCTCAGATCCGCCAGAAGTTCATTGACTTCTTCCTCCGCCACGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTTCGCCAATGCGGGCATGAACCAGGTGAGAGCGCGTGTGACCTGCCGGAGCAAACGCTCCCCTGAACGCAGCCCTGACCGGCCTCTTGTGCGCTCTGATTAGTTCAAGCCCATCTTCCTCAACACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGCGTGCCGCCAACACCCAGAAGTGCATCCGTGCAGGAGGCAAACACAATGACCTGTACGATGTGGGCAAAGAC]

[+] EMBL FR0060393            [CAAAGGAGTCTTCGGAGCGTCATTCTGGCAAAAAGGCGAGTTCTAGGCCTGATTCAGAATGGATTCCACTTTGACTGCAGCTCAGATCCGCCAGAAGTTCATTGACTTCTTCCTCCGCCACGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTTCGCCAATGCGGGCATGAACCAGGTGAGAGCGCGTGTGACCTGCCGGAGCAAACGCTCCCCTGAACGCAGCCCTGACCGGCCTCTTGTGCGCTCTGATTAGTTCAAGCCCATCTTCCTCAACACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGCGTGCCGCCAACACCCAGAAGTGCATCCGTGCAGGAGGCAAACACAATGACCTGTACGATGTGGGCAAAGAC]




>consensus_1888#0
CAAAGGAGTCTTCGGAGCGTCATTCTGGCAAAAAGGCGAGTTCTAGGCCTGATTCAGAAT
GGATTCCACTTTGACTGCAGCTCAGATCCGCCAGAAGTTCATTGACTTCTTCCTCCGCCA
CGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTT
CGCCAATGCGGGCATGAACCAGGTGAGAGCGCGTGTGACCTGCCGGAGCAAACGCTCCCC
TGAACGCAGCCCTGACCGGCCTCTTGTGCGCTCTGATTAGTTCAAGCCCATCTTCCTCAA
CACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGCGTGCCGCCAACACCCAGAAGTG
CATCCGTGCAGGAGGCAAACACAATGACCTGTACGATGTGGGCAAAGAC

consensusID : consensus_1888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 336
fasta sequence 
                              [ACTTTGACTGGGGCTCAGATCCGCCAGAGGTTCATTGACTTCTTCCTCCGCCACGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTTCGCCAATGCGGGCGATGAACCAGTTCAAGCCCATCTTCCTCAACACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGGGGGCCGCCAACACCCAGAAGTGCATCCGGGCAGGAGGCAAACACAATGGACCTGGACGATGTGGGCAAAGACGTTTACCATCACACCTTCTTCGAGAAGCTGGGGTCCTGGTCCTTCGGCGACTACTTTAAGCAACTGGGCC]

[+] EMBL FR0061569            [ACTTTGACTGGGGCTCATATCCGCCAGAAGTTCATTGACTTCTTCCTCCGCCACGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGTATGACCCCACGCTGCTGTTCGCCAATGCGGTCGATGAACCAGTTCAAGCCCATCTTCCTCAACACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGGGGGCCGCCAACACCCAGAAGTGCATCCGGGCAGGAGGCAAACACAATGGACCTGGACGATGTGGGCAAAGACGTTTACCATCACACCTTCTTCGAGAAGCTGGGGTCCTGGTCCTTCGGCGACTACTTTAAGCAACTGGGCC]
[+] EMBL FR0061658            [ACTTTGACTGCAGCTCAGATCCGCCAGAGGTTCATTGACTTCTTCCTCCGCCACGAGCACAGCTACGTGCACTCGTCAGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTTCGCCAATGCGGGC ATGAACCAGTTCAAGCCCATCTTCCTCAACACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGCGTGCCGCCAACACCCAGAAGTGCATCCGTGCAGGAGGCAAACACAAT GACCTGGACGATGTTGGCAAAGA                                                                       ]




>consensus_1888#1
ACTTTGACTGGGGCTCAGATCCGCCAGAGGTTCATTGACTTCTTCCTCCGCCACGAGCAC
AGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTTCGCCAAT
GCGGGCGATGAACCAGTTCAAGCCCATCTTCCTCAACACCATCGACCCGTCCCACCCCAT
GGCCAAGCTGCGGGGGGCCGCCAACACCCAGAAGTGCATCCGGGCAGGAGGCAAACACAA
TGGACCTGGACGATGTGGGCAAAGACGTTTACCATCACACCTTCTTCGAGAAGCTGGGGT
CCTGGTCCTTCGGCGACTACTTTAAGCAACTGGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1888#0      CAAAGGAGTCTTCGGAGCGTCATTCTGGCAAAAAGGCGAGTTCTAGGCCTGATTCAGAAT 60
consensus_1888#1      ------------------------------------------------------------
                                                                                  

consensus_1888#0      GGATTCCACTTTGACTGCAGCTCAGATCCGCCAGAAGTTCATTGACTTCTTCCTCCGCCA 120
consensus_1888#1      -------ACTTTGACTGGGGCTCAGATCCGCCAGAGGTTCATTGACTTCTTCCTCCGCCA 53
                             **********  **************** ************************

consensus_1888#0      CGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTT 180
consensus_1888#1      CGAGCACAGCTACGTGCACTCGTCGGCCACCGTGCCGCTGGATGACCCCACGCTGCTGTT 113
                      ************************************************************

consensus_1888#0      CGCCAATGCGGGCATGAACCAGGTGAGAGCGCGTGTGACCTGCCGGAGCAAACGCTCCCC 240
consensus_1888#1      CGCCAATGCGGGC--------GATGA---------------------------------- 131
                      *************        * ***                                  

consensus_1888#0      TGAACGCAGCCCTGACCGGCCTCTTGTGCGCTCTGATTAGTTCAAGCCCATCTTCCTCAA 300
consensus_1888#1      -----------------------------------ACCAGTTCAAGCCCATCTTCCTCAA 156
                                                         *  **********************

consensus_1888#0      CACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGCGTGCCGCCAACACCCAGAAGTG 360
consensus_1888#1      CACCATCGACCCGTCCCACCCCATGGCCAAGCTGCGGGGGGCCGCCAACACCCAGAAGTG 216
                      ************************************* * ********************

consensus_1888#0      CATCCGTGCAGGAGGCAAACACAATG-ACCTGTACGATGTGGGCAAAGAC---------- 409
consensus_1888#1      CATCCGGGCAGGAGGCAAACACAATGGACCTGGACGATGTGGGCAAAGACGTTTACCATC 276
                      ****** ******************* ***** *****************          

consensus_1888#0      ------------------------------------------------------------
consensus_1888#1      ACACCTTCTTCGAGAAGCTGGGGTCCTGGTCCTTCGGCGACTACTTTAAGCAACTGGGCC 336


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)