cluster # 1928

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Takifugu rubripes
cluster # 1928 cluster # 1928 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1928#0 length = 765 sequences # 1

consensus_1928#1 length = 643 sequences # 1
consensus_1928#2 length = 464 sequences # 1

consensusID : consensus_1928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTCCTTTGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCATCTTCCTGCGCAGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGAAGACGGAGTTTATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCTGGATGATTGGTTCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGTGGAGGTGGATGATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGTTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG]

[+] EMBL CA588442             [CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTCCTTTGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCATCTTCCTGCGCAGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGAAGACGGAGTTTATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCTGGATGATTGGTTCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGTGGAGGTGGATGATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGTTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG]




>consensus_1928#0
CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTCCTTTGGGGGATCACATG
AAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCA
GAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGC
CGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGAG
ATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGG
CAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGG
GGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGTGTGGAGC
TCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCATCTTCCTGCGC
AGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGAAGACGGAGTTT
ATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCTGGATGATTGGT
TCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGTGGAGGTGGATG
ATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGTTTATCCCAGAA
TCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG

consensusID : consensus_1928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTCCATTGGGGGATCACATGAAGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGGTGAGCTCACAGCCGTTTCCAACTGCCTGACATCACCTGGAACACCTGGAACACCTGTCCTGTTACTGCTGAGTGTGTCGGTCCTCAGAGGTCCCGTGTTGTGTTTAGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGCTGCTCGTTCTCCAACGTTCTTCTTTTGCTGGTGCAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTG]

[+] EMBL CA588454             [CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTCCATTGGGGGATCACATGAAGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGCCATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGGTGAGCTCACAGCCGTTTCCAACTGCCTGACATCACCTGGAACACCTGGAACACCTGTCCTGTTACTGCTGAGTGTGTCGGTCCTCAGAGGTCCCGTGTTGTGTTTAGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGCTGCTCGTTCTCCAACGTTCTTCTTTTGCTGGTGCAGGTGGTGTTTGGAGGGTTTGTGTGGAGCTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTG]




>consensus_1928#1
CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTCCATTGGGGGATCACATGA
AGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAG
AGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCC
GTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGCCATGGAGA
TCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGAGGACTGGC
AGGTGGCGCTGGTCTCCACGGTGAGCTCACAGCCGTTTCCAACTGCCTGACATCACCTGG
AACACCTGGAACACCTGTCCTGTTACTGCTGAGTGTGTCGGTCCTCAGAGGTCCCGTGTT
GTGTTTAGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGTTCTGGGGGGATACGTTGCTG
ACAGATACGGACGCTGGAAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGCTGCT
CGTTCTCCAACGTTCTTCTTTTGCTGGTGCAGGTGGTGTTTGGAGGGTTTGTGTGGAGCT
CCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTG

consensusID : consensus_1928#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGTCCCTCCTCCCCAGGTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT]

[+] EMBL BU807793             [ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGATCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAAACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGGCTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGCCATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGAGGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGTCCCTCCTCCCCAGGTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT]




>consensus_1928#2
ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGA
TCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA
ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG
CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGC
CATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGA
GGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGT
CCCTCCTCCCCAGGTTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCC
AGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1928#0      --CCTGTCAGGTGAACATCAACAGGCAGAAGATCGACGCTCCTTC-----CTTTGGGGGA 53
consensus_1928#1      ---CGGTTAGGTGAACATCAACAGGCAGAAGACCGACGCTCCTTC-----CATTGGGGGA 52
consensus_1928#2      ACCTGGCCAGGTGAACATCAACACGCAGAAGATCGACGCTCCTTCAGGTGTAATGGGGGA 60
                           *  *************** ******** ************        *******

consensus_1928#0      TCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA 113
consensus_1928#1      TCACATGAAGACCGAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA 112
consensus_1928#2      TCACATGAAGACCAAGCTGGTGAGCGCCATCCACCTGCAGGAAGTGGAGCTGCGGGAGAA 120
                      ************* **********************************************

consensus_1928#0      ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG 173
consensus_1928#1      ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG 172
consensus_1928#2      ACCTGCAGAGACAAAGACTGATGAGACGTTCACTGTGGAGGAGGCCGTGGAAACGATCGG 180
                      ************************************************************

consensus_1928#0      CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGC 233
consensus_1928#1      CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCCGGTGTCGTGGAGGC 232
consensus_1928#2      CTTTGGCCGTTTTCATGTTCTGCTCTTTTTCATCATGGGAGGAGCTGGTATCGTGGAGGC 240
                      ********************************************* *** **********

consensus_1928#0      CATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGA 293
consensus_1928#1      CATGGAGATCATGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGGCGCCTAGA 292
consensus_1928#2      CATGGATANTTTGCTGCTGGCCGTCATTTCTCCTGAGATCCGATGCGAGTGCCGCCTAGA 300
                      ****** *   **************************************** ********

consensus_1928#0      GGACTGGCAGGTGGCGCTGGTCTCCACGATGGTGTTCCTGGGCTTCATGGTCTGCGGAGT 353
consensus_1928#1      GGACTGGCAGGTGGCGCTGGTCTCCACGGTGA-GCTCACAGCCGTTTCCAACTGC----- 346
consensus_1928#2      GGACTGGCAGGTGGCGCTGGTCTCCACGCTCTTCTCCCTGGAGCTGACCCGTCCCTGTGT 360
                      **************************** *      *   *   *         *     

consensus_1928#0      TCTGGGGGGATACGTTGCTGACAGATACGGACGCTGGAAGGTGGTGTTTGGAGGGTTTGT 413
consensus_1928#1      -CTG-------ACATCAC---------------CTGGAA-----CACCTGGAACACCTGT 378
consensus_1928#2      CCCTCCTCCCCAGGTTATC--------------CCAGAATCGGCTCGTTATAACGTATCT 406
                       *         *  *                  *  ***         *  *     * *

consensus_1928#0      G-TGGAG---CTCCTACTTCTCTCTGCTCACATCCTTTGCTCCTTCTTATGGTTGGTTCA 469
consensus_1928#1      CCTGTTA---CTGCTGAGTGTGTCGGTCCTCAG---AGGTCCCGTGTTGTGTTTAGATGG 432
consensus_1928#2      GCAGGAAACCTTCCAGCTGCTGTGGAAACGCTGCAGAAAATAGCAGCCATGAACCGAT-- 464
                         *       * *      * *     * *                  **    * *  

consensus_1928#0      TCTTCCTGCGCAGCATGGTGGGATGTGGAGTGGCAGGTGTGTCACAAGGGTTCGTGTTGA 529
consensus_1928#1      TGTTCCTGGGCTTCATGGTC---TGCGGAGTTCTGGGGGGAT-----------ACGTTGC 478
consensus_1928#2      ------------------------------------------------------------
                                                                                  

consensus_1928#0      AGACGGAGTTTATTCCTGCACAACATCGAGCTCTCCTGCTTCCTCTAGCTACAATCTTCT 589
consensus_1928#1      TGACAGATACGGACGCTGG--AAGGTCTTTCTTTCCCTTTTCCTCCCGTCTGATTGCTGC 536
consensus_1928#2      ------------------------------------------------------------
                                                                                  

consensus_1928#0      GGATGATTGGTTCCATGCTCATCATCATATTGGGGATGTTGCTGGTCCCCACCCTGGGGT 649
consensus_1928#1      TGCTCGTTC-TCCAACGTTCTTCTT----TTGCTGGTGCAGGTGGTGTTTGG---AGGGT 588
consensus_1928#2      ------------------------------------------------------------
                                                                                  

consensus_1928#0      GGAGGTGGATGATCCGGGTCTCAATTGCCCCCAGTCTCATCCTCATCTTCCTATTTAAGT 709
consensus_1928#1      TTGTGTGGA-------GCTCCTACTTCTCTCTGCTCACATCCTT-TGCTCCTTCTTATGG 640
consensus_1928#2      ------------------------------------------------------------
                                                                                  

consensus_1928#0      TTATCCCAGAATCGGCTCGTTATAACGTATCTGCAGGAAACCTTCCAGCTGCTGTG 765
consensus_1928#1      TTG----------------------------------------------------- 643
consensus_1928#2      --------------------------------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)