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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence
[CCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCTTTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACATCTTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGTCACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTTTTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACATGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGGGCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCTTCGACACTGCCAAGTCCAAGCTGACCCAGAACAACTTTGCGCTGGGTTACAGGGCCGGCGACTTCCAGCTGCACACCAACGTGAA]
[+] EMBL BU805393 [CCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCTTTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACATC TGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGTCACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTTTTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACATGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGGGCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCTTCGACACTGCCAAGTCCAAGCTGACCCAGAACAACTTTGCGCTGGGTTACAGGGCCGGCGACTTCCAGCTGCACACCAACGTGAA]
[+] EMBL BU806851 [ GGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCTTTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACATCTTGTCTTCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGTCACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTTTTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACATGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGGGCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCT ]
consensusID : consensus_1933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[TCACCCGTTAGAGTGCTAAGCTAAGCTAGCTGTCAATCCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGAGTTCAACACATCTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGNTCCACCGTGG]
[+] EMBL BU807585 [TCACCCGTTAGAGTGCTAAGCTAAGCTAGCTGTCAATCCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGAGTTCAACACATCTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGNTCCACCGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1933#0 -------------------------------------CCACTCAGCAGCATCACGCCAGG 23
consensus_1933#1 TCACCCGTTAGAGTGCTAAGCTAAGCTAGCTGTCAATCCACTCAGCAGCATCACGCCAGG 60
***********************
consensus_1933#0 GGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCC 83
consensus_1933#1 GGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCC 120
************************************************************
consensus_1933#0 CTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCT 143
consensus_1933#1 CTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGG-- 178
**********************************************************
consensus_1933#0 TTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACAT 203
consensus_1933#1 ------------------------------------------------AGTTCAACACAT 190
************
consensus_1933#0 CTTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAG 263
consensus_1933#1 CT-GGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAG 249
** *********************************************************
consensus_1933#0 ATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACC 323
consensus_1933#1 ATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACC 309
************************************************************
consensus_1933#0 GAGGT--CACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTT 381
consensus_1933#1 GAGGNTCCACCGTGG--------------------------------------------- 324
**** ********
consensus_1933#0 TTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACA 441
consensus_1933#1 ------------------------------------------------------------
consensus_1933#0 TGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGG 501
consensus_1933#1 ------------------------------------------------------------
consensus_1933#0 GCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCTTCGACACTGCCAAGTCCAAGCTGA 561
consensus_1933#1 ------------------------------------------------------------
consensus_1933#0 CCCAGAACAACTTTGCGCTGGGTTACAGGGCCGGCGACTTCCAGCTGCACACCAACGTGA 621
consensus_1933#1 ------------------------------------------------------------
consensus_1933#0 A 622
consensus_1933#1 -
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |