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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 440 fasta sequence
[CATCCGACAGCACTGTGGCTAACGTTAACGGAGGAGAGACCGGTTCCCTCAACGGGGAGCCGGTGGTGAAGCGGCCACGGGAGAGTGGCTCGCAGGTGTCTTCTCTCCGTGTCCCGAAAGAGCCGCAGAACAAAGTGACCGTTGTTCTCGGAGCGCAGTGGGGTGACGAGGGAAAAGGAAAAGTTGTGGACTTGCTCGCCATGGATGCAGATATCGTGGGCAGGTGTCAGGGGGGCAACAACGCAGGTCACACGGTGGTCGTGGACTCGGGGGAGTACGACTTCCACCTGCTGCCCAGTGGAGTGCTCAACAAGAAGGCCACCTCCTTCATTGGGAATGGGGTGGGCGATCCACCTTGCCTGGGCTTGTTTGAGGAAGCTTGGAAAAGAAACTTCAGAAAGGCAAAGGATTACAGGGATGGGAGGAAAGATTGAAGATTT]
[+] EMBL BU805392 [CATCCGACAGCACTGTGGCTAACGTTAACGGAGGAGAGACCGGTTCCCTCAACGGGGAGCCGGTGGTGAAGCGGCCACGGGAGAGTGGCTCGCAGGTGTCTTCTCTCCGTGTCCCGAAAGAGCCGCAGAACAAAGTGACCGTTGTTCTCGGAGCGCAGTGGGGTGACGAGGGAAAAGGAAAAGTTGTGGACTTGCTCGCCATGGATGCAGATATCGTGTGCAGGTGTCAGGGGGGCAACAACGCAGGTCACACGGTGGTCGTGGACTCGGTGGAGTACGACTTCCACCTGCTGCCCAGTGGAGTGCTCAACAAGAAGGCCACCTCCTTCATTGGGAATGGAGT GGTGATCCACC TGCCTGGTC TGTTTGAGGAAGCT GAAAAGAACCTTCAGAAAGGCAAAGGATTACAGGGATGGGAGGAAAGATTGAAGATTT]
[+] EMBL FR0061009 [ GGATATTGTCTCGCAGGTGTTTTCTCTCCGTGTCCCGAAAGAGCCGCAGAATAAAGTGACCGTTGTTCTCGGAGCGCAGTGGGGTGACGAGGGAAAAGGAAAAGTTGTGGACTTGCTCGCCATGGATGCAGATATCGTGGGCAGGTGTCAGGGGGGCAACAACTCAGGTCACACGGTGGTCGTGGACTCGGGGGAGTACGACTTCCACCTGCTGCCCAGTGGAGTGCTCAACAAGAAGGCCACCTTCTTTATTGGGAATGGGGTGGGCAATCCACCTTGCCTGGGCTTGTTTGAGGAAACTTGAAAAAGAAAC ]
consensusID : consensus_1934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[GTGGNGAAGCGGCCACGGGAGGGGCTCTCTCATNTTTCTTCTCTCCCCCCCCTAAATAACCGCAGAACAAAGTGACCGTTGTTCTCGGAGCGCAGCGGGGTGACGAGGGAAAAGGAAAAGTTGTGGACTTGCTCGCCATGGACGCAGATATCGTGGGCAGGTGTCAGGGGGGCAACAACGCAGGTCACACGGGGGTCGGGACTCGGGGGAGGACGACTTTCACCTGCTGCCCAGTGGAGTGCTTAACAAGAAGGCGCCCTTCTTCATTGGGAAGGGGT]
[+] EMBL FR0059666 [GTGGNGAAGCGGCCACGGGAGGGGCTCTCTCATNTTTCTTCTCTCCCCCCCCTAAATAACCGCAGAACAAAGTGACCGTTGTTCTCGGAGCGCAGCGGGGTGACGAGGGAAAAGGAAAAGTTGTGGACTTGCTCGCCATGGACGCAGATATCGTGGGCAGGTGTCAGGGGGGCAACAACGCAGGTCACACGGGGGTCGGGACTCGGGGGAGGACGACTTTCACCTGCTGCCCAGTGGAGTGCTTAACAAGAAGGCGCCCTTCTTCATTGGGAAGGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1934#0 CATCCGACAGCACTGTGGCTAACGTTAACGGAGGAGAGACCGGTTCCCTCAACGGGGAGC 60
consensus_1934#1 ------------------------------------------------------------
consensus_1934#0 CGGTGGTGAAGCGGCCACGGGAGAGTGGCTCGCAGGTGTCTTCTCTCCGTGTCCCGAAAG 120
consensus_1934#1 --GTGGNGAAGCGGCCACGGGAGGGGCTCTCTCATNTTTCTTCTCTCCCC-CCCCTAAAT 57
**** **************** * *** ** * ********** *** ***
consensus_1934#0 AGCCGCAGAACAAAGTGACCGTTGTTCTCGGAGCGCAGTGGGGTGACGAGGGAAAAGGAA 180
consensus_1934#1 AACCGCAGAACAAAGTGACCGTTGTTCTCGGAGCGCAGCGGGGTGACGAGGGAAAAGGAA 117
* ************************************ *********************
consensus_1934#0 AAGTTGTGGACTTGCTCGCCATGGATGCAGATATCGTGGGCAGGTGTCAGGGGGGCAACA 240
consensus_1934#1 AAGTTGTGGACTTGCTCGCCATGGACGCAGATATCGTGGGCAGGTGTCAGGGGGGCAACA 177
************************* **********************************
consensus_1934#0 ACGCAGGTCACACGGTGGTCGTGGACTCGGGGGAGTACGACTTCCACCTGCTGCCCAGTG 300
consensus_1934#1 ACGCAGGTCACACGGGGGTCG-GGACTCGGGGGAGGACGACTTTCACCTGCTGCCCAGTG 236
*************** ***** ************* ******* ****************
consensus_1934#0 GAGTGCTCAACAAGAAGGCCACCTCCTTCATTGGGAATGGGGTGGGCGATCCACCTTGCC 360
consensus_1934#1 GAGTGCTTAACAAGAAGGCGCCCTTCTTCATTGGGAA-GGGGT----------------- 278
******* *********** *** ************ *****
consensus_1934#0 TGGGCTTGTTTGAGGAAGCTTGGAAAAGAAACTTCAGAAAGGCAAAGGATTACAGGGATG 420
consensus_1934#1 ------------------------------------------------------------
consensus_1934#0 GGAGGAAAGATTGAAGATTT 440
consensus_1934#1 --------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |