cluster # 1950

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Takifugu rubripes
cluster # 1950 cluster # 1950 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1950#0 length = 386 sequences # 1

consensus_1950#1 length = 294 sequences # 1
consensus_1950#2 length = 161 sequences # 1

consensusID : consensus_1950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGGGGCCCCGGTACCAAGTTTTGGCCCCC]

[+] EMBL FR0056977            [CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGGGGCCCCGGTACCAAGTTTTGGCCCCC]




>consensus_1950#0
CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCT
GGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCT
TTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGA
TATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAA
GGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAA
CATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGG
GGCCCCGGTACCAAGTTTTGGCCCCC

consensusID : consensus_1950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [GCCAAGAAACTGGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGGTAAAA]

[+] EMBL CA845022             [GCCAAGAAACTGGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGGTAAAA]




>consensus_1950#1
GCCAAGAAACTGGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAA
AAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAG
CAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACG
CCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAG
CTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGGTAAAA

consensusID : consensus_1950#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [GACAGTCTACAGTCCTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAACTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGGACCCAACTTTTGGCCCC]

[+] EMBL FR0057445            [GACAGTCTACAGTCCTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAACTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGGACCCAACTTTTGGCCCC]




>consensus_1950#2
GACAGTCTACAGTCCTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGT
TTTGCCAAGAAACTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAAAAAA
AAAAAACCCCAGGGGGGGCCCGGGACCCAACTTTTGGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1950#0      CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCT 60
consensus_1950#1      -------------------------------------------------GCCAAGAAACT 11
consensus_1950#2      ------------------------------------------------------------
                                                                                  

consensus_1950#0      GGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCT 120
consensus_1950#1      GGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCT 71
consensus_1950#2      ----------------------------------------GACAGTCTACAGTCCTGCCT 20
                                                              ** * *  * *  **   **

consensus_1950#0      TTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGA 180
consensus_1950#1      TTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGA 131
consensus_1950#2      GGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAACTGGGAG- 79
                          * * *    *  *  *    *** *     * **  *    * ** *  **   * 

consensus_1950#0      TATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAA 240
consensus_1950#1      TATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAA 191
consensus_1950#2      --TCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAA------------AAAAAAAAA 125
                        *  *      *  * *  *  **  **   ****               **    ***

consensus_1950#0      GGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAA 300
consensus_1950#1      GGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAGCTGTATGCAAA 251
consensus_1950#2      ACCCCAGGGGG--GGCCCGGGACCCAACTTTTGGCCCC---------------------- 161
                        ** ** ***  *  * *  * *    **   *** *                      

consensus_1950#0      CATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGG 360
consensus_1950#1      CATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGG--TAAAA--------------- 294
consensus_1950#2      ------------------------------------------------------------
                                                                                  

consensus_1950#0      GGCCCCGGTACCAAGTTTTGGCCCCC 386
consensus_1950#1      --------------------------
consensus_1950#2      --------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)