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Takifugu rubripes
cluster # 1959 cluster # 1959       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1959#0 length = 458 sequences # 1  
 consensus_1959#1 length = 411 sequences # 3  
consensusID : consensus_1959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence 
                              [TACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACATAGAAGCTGAGCCAACGACAGATGCGTCTGTGTGTAACCATGGAAACCAGAGGTGTTCGGACCCGGTGCCATCGTGTGACGCGGCGTCCTTAAGGAGTGTTGCCGGCGCCTCAAAAAGCATCTCAAAGCACCATGATGGGACTGGGCGTATTCTAAATAAGACTGCTGGGAATAAAACTAAAATCTCTCAAATTCTGAAGGGCGAACTCTTCACATGCAGAAAATCTACAGCCGGGTGCCACCAAGGCAAAAGGAACGGGCCAAAGTTAACTCGCCACAGTCGGGTCTTTGGGCTGTAGCCAGGCTAAAGATGTGTTGAGGGCGAGGAACTGGTAAGACATTTAAAAAAAGAAGCAGCATAATGCAAACAAAAACACCTGCACATGAGTTTTTAAACCACATC]

[+] EMBL CA332030             [TACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACATAGAAGCTGAGCCAACGACAGATGCGTCTGTGTGTAACCATGGAAACCAGAGGTGTTCGGACCCGGTGCCATCGTGTGACGCGGCGTCCTTAAGGAGTGTTGCCGGCGCCTCAAAAAGCATCTCAAAGCACCATGATGGGACTGGGCGTATTCTAAATAAGACTGCTGGGAATAAAACTAAAATCTCTCAAATTCTGAAGGGCGAACTCTTCACATGCAGAAAATCTACAGCCGGGTGCCACCAAGGCAAAAGGAACGGGCCAAAGTTAACTCGCCACAGTCGGGTCTTTGGGCTGTAGCCAGGCTAAAGATGTGTTGAGGGCGAGGAACTGGTAAGACATTTAAAAAAAGAAGCAGCATAATGCAAACAAAAACACCTGCACATGAGTTTTTAAACCACATC]




>consensus_1959#0
TACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACATAGAA
GCTGAGCCAACGACAGATGCGTCTGTGTGTAACCATGGAAACCAGAGGTGTTCGGACCCG
GTGCCATCGTGTGACGCGGCGTCCTTAAGGAGTGTTGCCGGCGCCTCAAAAAGCATCTCA
AAGCACCATGATGGGACTGGGCGTATTCTAAATAAGACTGCTGGGAATAAAACTAAAATC
TCTCAAATTCTGAAGGGCGAACTCTTCACATGCAGAAAATCTACAGCCGGGTGCCACCAA
GGCAAAAGGAACGGGCCAAAGTTAACTCGCCACAGTCGGGTCTTTGGGCTGTAGCCAGGC
TAAAGATGTGTTGAGGGCGAGGAACTGGTAAGACATTTAAAAAAAGAAGCAGCATAATGC
AAACAAAAACACCTGCACATGAGTTTTTAAACCACATC

consensusID : consensus_1959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 411
fasta sequence 
                              [TTTTACTTGGTGAACAATTAAACTTTTATTGGTTTAAACACATTCAGACAAACTCGAAGGCAGCACTAGTAAACAAGGCAC-AAAAAAAAGCTTTGATGGGACAGAAGAAGAAACTGAATAGAATTTTGGGCGTCGTGGCACCTGAAAGTGTCTGTATATGGCTGGATGTGGCAAAGTGGTTTTCTGTCGTACCTGCAGGAAGTTTAAACCACGTGACAGCAGACTGGGTCGGTCAAAAAGCAAAAGCTCGACATGATGACGCGGCAGAATGCAACAGAAAATCACCTCACTGGTCTGAAAGTGCCATGAATCTATTTCACTTTGGGGCGTTTAATTTTCCTTTTTTTTTACAAACTACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACAT]

[+] EMBL CA332563             [TTTTACTTGGTGAACAATTAAACTTTTATTGGTTTAAACACATTCAGACAAACTCGAAGGCAGCACTAGTAAACAAGGCAC AAAAAAAAGCTTTGATGGGACAGAAGAAGAAACTGAATAGAATTTTGGGCGTCGTGGCACCTGAAAGTGTCTGTATATGGCTGGATGTGGCAAAGTGGTTTTCTGTCGTACCTGCAGGAAGTTTAAACCACGTGACAGCAGACTGGTTCGGTCAAAAAGCAAAAGCTCGACATGATGACGCGGCAGAATGCAACAGAAAATCACCTCACTGGTCTGAAAGTGCCATGAATCTATTTCACTTTGGGGCGTTTAATTTTCCTTT                                                                    ]
[-] EMBL CA330465             [           GAACAATTAAACTTTTATTGGTTTAAACACATTCAGACAAACTCGAAGGCAGCACTAGTAAACAAGGCAC AAAAAAAAGCTTTGATGGGACAGAAGAAGAAACTGAATAGAATTTTGGGCGTCGTGGCACCTGAAAGTGTCTGTATATGGCTGGATGTGGCAAAGTGGTTTTCTGTCGTACCTGCAGGAAGTTTAAACCACGTGACAGCAGACTGGGTCGGTCAAAAAGCAAAAGCTCGACATGATGACGCGGCAGAATGCAACAGAAAATCACCTCACTGGTCTGAAAGTGCCATGAATCTATTTCACTTTGTGGCGTTTAATTTTCCTTTTTTTTTACAAACTACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACAT]
[-] EMBL CA845454             [            AACAATTAAACTTTTATTGGTTTAAACACATTCAGACAAACTAGAAGGCAGCACTAGTAAACAAGGCACAAAAAAAAAGCTTTGATGGGACAGAAGAAGAAACTGAATAGAATTTTGGGCGTCGTGGCACCTGAAAGTGTCTGTATATGGCTGGATGTGGCAAAGTGGTTTTCTGTCGTACCTGCAGGAAGTTTAAACCACGTGACAGCAGACTGGGTCGGTCAAAAAGCAAAAGCTCGACATGATGACGCGGCAGAATGCAACAGAAAATCACCTCACT                                                                                                                        ]




>consensus_1959#1
TTTTACTTGGTGAACAATTAAACTTTTATTGGTTTAAACACATTCAGACAAACTCGAAGG
CAGCACTAGTAAACAAGGCACAAAAAAAAGCTTTGATGGGACAGAAGAAGAAACTGAATA
GAATTTTGGGCGTCGTGGCACCTGAAAGTGTCTGTATATGGCTGGATGTGGCAAAGTGGT
TTTCTGTCGTACCTGCAGGAAGTTTAAACCACGTGACAGCAGACTGGGTCGGTCAAAAAG
CAAAAGCTCGACATGATGACGCGGCAGAATGCAACAGAAAATCACCTCACTGGTCTGAAA
GTGCCATGAATCTATTTCACTTTGGGGCGTTTAATTTTCCTTTTTTTTTACAAACTACAT
TAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1959#0      -TACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGGACTGATGAACACATAGA 59
consensus_1959#1      TTTTACTTGGTGAACAATTAAACTTTTATTGGTTTAAACACATTCAGACAAACTCG--AA 58
                       *  * *   **** **   *  ***   *        ***   * **  *** *    *

consensus_1959#0      AGCTGAGCCAACGACAGATGCGTCTGTGTGTAACCATGGAAACCAGAGGTGTTCGGACCC 119
consensus_1959#1      GGCAGCACTAGTAAACAAGGCA--CAAAAAAAAGCTTTGATGGGACAGAAGAAGAAACTG 116
                       ** *  * *   *   * **          ** * * **    * **  *     **  

consensus_1959#0      GGTGCCATCGTGTGACGCGGCGTCCTTAAGGAGTGTTGCCGGCGCCTCAAAAAGCATCTC 179
consensus_1959#1      AATAGAATTTTG-GGCGTCGTGGCACCTGAAAGTGT---CTGTATATGGCTGGATGTGGC 172
                        *   **  ** * **  * * *       *****   * *    *         *  *

consensus_1959#0      AAAGCACCATGATGGGACTGGGCGTATTCTAAATAAGACTGCTGGGAATAAAACTAAAAT 239
consensus_1959#1      AAAGTGGTTTTCTG-------TCGTACCTGCAGGAAGTTTAAACCACGTGACAGCAGACT 225
                      ****     *  **        ****     *  ***  *        * * *  * * *

consensus_1959#0      CTCTCAAATTCTGAAGGGCGAACTCTTCACATGCAGAAAATCTACAGCCGGGTGCCACC- 298
consensus_1959#1      GGGTCGG---TCAAAAAGCAAAAGCTCGACATGATGA-----CGCGGCAGAATGCAACAG 277
                         **        **  ** **  **  *****  **       * ** *  *** **  

consensus_1959#0      AAGGCAAAAGGAACGGGCCAAAGTTAACTCGCCACAGTCGGGTCTTTGGGC-TGTAGCCA 357
consensus_1959#1      AAAATCACCTCACTGGTCTGAAAGTGCCATGAATCTATTTCACTTTGGGGCGTTTAATTT 337
                      **    *    *  ** *  **  *  *  *   *  *      ** **** * **    

consensus_1959#0      GGCTAAAGATGTGTTGAGGGCGAGGAACTGGTAAGACATTTAAAAAAAGAAGCAGCATAA 417
consensus_1959#1      TCCTTTTTTTTTACAAACTACATTAACTGAATAAGGCACTTTTCCATAAGAGGTGCACGG 397
                        **     * *    *   *    *     **** ** **    * *  **  ***   

consensus_1959#0      TGCAAACAAAAACACCTGCACATGAGTTTTTAAACCACATC 458
consensus_1959#1      -ACTGATGAACACAT-------------------------- 411
                        *  *  ** ***


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)