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Takifugu rubripes
cluster # 1961 cluster # 1961       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1961#0 length = 467 sequences # 3  
 consensus_1961#1 length = 404 sequences # 1  
consensusID : consensus_1961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 467
fasta sequence 
                              [CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAACTCTCNAAAA]

[+] EMBL CA844465             [CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCCTTTTAATAAAAT                    ]
[+] EMBL CA846438             [                     TGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCTTGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAAC         ]
[+] EMBL CA845768             [                                                                       AGATGACCCAAACATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGTGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGGCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCC TTCAATAAAATTCAATTAAAACTCTCNAAAA]




>consensus_1961#0
CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCG
AGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTA
GGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACT
GCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGT
CCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGA
TGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAG
CACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGC
TGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAACTCTCNAAAA

consensusID : consensus_1961#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence 
                              [CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGGTGAGTGTCCTTCTGAAGACCAGCAGCACTGTGTGGTATCTACAGCCAGATGCTTCATCAACTGGCTCGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTGGCATCGTT]

[+] EMBL FR0058437            [CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGGTGAGTGTCCTTCTGAAGACCAGCAGCACTGTGTGGTATCTACAGCCAGATGCTTCATCAACTGGCTCGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTGGCATCGTT]




>consensus_1961#1
CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTG
AGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTAGGCCTG
GGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGC
CCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAA
CGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGGTGAGTG
TCCTTCTGAAGACCAGCAGCACTGTGTGGTATCTACAGCCAGATGCTTCATCAACTGGCT
CGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTGGCATCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1961#0      CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCG 60
consensus_1961#1      ------CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCG 54
                            ******************************************************

consensus_1961#0      AGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTA 120
consensus_1961#1      AGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTA 114
                      ************************************* **********************

consensus_1961#0      GGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACT 180
consensus_1961#1      GGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACT 174
                      ************************************************************

consensus_1961#0      GCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGT 240
consensus_1961#1      GCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGT 234
                      ************************************************************

consensus_1961#0      CCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGA 300
consensus_1961#1      CCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGG 294
                      *********************************************************** 

consensus_1961#0      TGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAG 360
consensus_1961#1      TG---AGTGTCCT----TCTGAAGACCAGCAGCACTGTG---------TGGTATCTACAG 338
                      **   ****        * * **   * * * **   *          * *  *** ***

consensus_1961#0      C--ACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGA 418
consensus_1961#1      CCAGATGCTTCATCAACTGGC--TCGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTG 396
                      *    ******  ** * **   *  * **  *  ***   ** * *  *** *** *  

consensus_1961#0      GCTGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAACTCTCNAAAA 467
consensus_1961#1      GCATCGTT----------------------------------------- 404
                      **  * *


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)