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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 804 fasta sequence
[CTCTCAAAGATGGCGCTGTCCTGTCCGAGCCTGTTTAGTAATTTGTCTCTGATGAGACTGTGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTGGTCCTGCTTTTCCAGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGACTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGAAGATCACGAGCGGAGTACAGTTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGTTCGCAGAGACTTGATCAAAGCCATTCCACTTGTGCTCATAACCATCCCCCCCCTGGCCAACTACCTGGTGTTTGTCATGATGTACTTTTTCCCAAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGAGTTCCGAGGAGTGTACCATTCTCTCCGAGCTCGGCACCACTGGCCCGTCATCGCAGGGCTGCAGAACACCGGCCGCCGTATCAAAGAGGGCCAACTCCAGGGCCGCCTGCTGGACCTGTGCGCTAAATTGCAGAGCGGTCAACACCCCGCGGTGTCTGAAGTCCTGGCTGTTCGTGGCCTCTTCTCCAAACGGGCTCTTGCCATAAAGAGGATGAAAGCGGATCACATGAGACACATTAGCCCCCTGCTCTTCCTGACGCCTCGCCTC]
[+] EMBL CA846217 [CTCTCAAAGATGGCGCTGTCCTGTCCGAGCCTGTTTAGTAATTTGTCTCTGATGAGACTGTGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTTGTCCTGCTTTTCCAGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGAGTACAGTTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGTTCGCAGAGACTTGATCAAAGCCATTCCACTTGTGCTCATAACCATCCCCCCCCTGGCCAACTACCTGGTGTTTGTCATGATGTACTTTTTCCCAAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGAGTTCCGAGGAGTGTACCATTCTCTCCGAGCTCGGCACCACTGGCCCGTCATCGCAGGGCTGCAGAACACCGGCCGCCGTATCAAAGAGGGCCAACTCCAGGGCCGCCTGCTGGACCTGTGCGCTAAATTGCAGAGCGGTCAACACCCCGCGGTGTCTGAAGTCCTGGCTGTTCGTGGCCTCTTCTCCAAACGGGCTCTTGCCATAAAGAGGATGAAAGCGGATCACATGAGACACATTAGCCCCCTGCTCTTCCTGACGCCTCGCCTC]
[+] EMBL FR0061511 [ CTGTTTAGTAATTTGTCTCTGATGAGACTGTGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTGGTCCTGCTTTTCCAGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGACTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGAATATCACGAGCGGAGTACAGTTCCAAGATTTGCC ]
consensusID : consensus_1981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence
[TGCACGAGGCTGTTAAAAGGGGGTGAACCAGGATCTTCCCTGTCTACACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGCACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGGGCACAGCTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGTAGTCCGAGGAGGGGACCATTCTTCTGCGAGCGTCGGCACCACTTGGCCCCGTCAATGCGCAAGGGCTTGGCAGA]
[+] EMBL FR0060638 [TGCACGAGGCTGTTAAAAGGGGGTGAACCAGGATCTTCCCTGTCTACACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGGGCACAGCTCCAAGATTTGCCTTACAGGGACATG ]
[+] EMBL FR0060980 [ ACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGACGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGCACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGAGTACAGTTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGTAGTCCGAGGAGGGGACCATTCTTCTGCGAGCGTCGGCACCACTTGGCCCCGTCAATGCGCAAGGGCTTGGCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1981#0 CTCTCAAAGATGGCGCTGTCCTGTCCGAGCCTGTTTAGTAATTTGTCTCTGATGAGACTG 60
consensus_1981#1 ------------------------------------------------------------
consensus_1981#0 TGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTGGTCCTGCTTTTCC 120
consensus_1981#1 --------------------------TGCACGAGGCTGTTAAAAGGGG----GTGAACCA 30
** * * * * ** * *
consensus_1981#0 AGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATAT 180
consensus_1981#1 GGATCTTCCCTGTCTACACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATAT 90
*************** *******************************************
consensus_1981#0 GTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGACTT 240
consensus_1981#1 GTTCAAACCAGGCTCCAGAGACTCAATAGCAAGCACGAAAGTTTCCTCAAAATGCGATTT 150
********************************* *********************** **
consensus_1981#0 CCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGAT 300
consensus_1981#1 CCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGAT 210
************************************************************
consensus_1981#0 GCCAAAGAAGTGCAGAGGATAAAAACAAAGAAGATCACGAGCGGAGTACAGTTCCAAGAT 360
consensus_1981#1 GCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGGGCACAGCTCCAAGAT 270
******************************* ************ * **** ********
consensus_1981#0 TTGCCTTACAGGGACATGGAGAAGCTCAGACAGGTTCGCAGAGACTTGATCAAAGCCATT 420
consensus_1981#1 TTGCCTTACAGGGACATGGAGAAGCTCAGACAGG-------------------------- 304
**********************************
consensus_1981#0 CCACTTGTGCTCATAACCATCCCCCCCCTGGCCAACTACCTGGTGTTTGTCATGATGTAC 480
consensus_1981#1 ------------------------------------------------------------
consensus_1981#0 TTTTTCCCAAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGAGTTC 540
consensus_1981#1 ------------CAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGTAGTC 352
******************************************* **
consensus_1981#0 CGAGGAGTGTACCATTCT-CTCCGAGC-TCGGCACCACTGG--CCCGTCATCGCAGGGCT 596
consensus_1981#1 CGAGGAGGGGACCATTCTTCTGCGAGCGTCGGCACCACTTGGCCCCGTCAATGCGCAAGG 412
******* * ******** ** ***** *********** * ******* **
consensus_1981#0 GCAGAACACCGGCCGCCGTATCAAAGAGGGCCAACTCCAGGGCCGCCTGCTGGACCTGTG 656
consensus_1981#1 GCTTGGCAGA-------------------------------------------------- 422
** **
consensus_1981#0 CGCTAAATTGCAGAGCGGTCAACACCCCGCGGTGTCTGAAGTCCTGGCTGTTCGTGGCCT 716
consensus_1981#1 ------------------------------------------------------------
consensus_1981#0 CTTCTCCAAACGGGCTCTTGCCATAAAGAGGATGAAAGCGGATCACATGAGACACATTAG 776
consensus_1981#1 ------------------------------------------------------------
consensus_1981#0 CCCCCTGCTCTTCCTGACGCCTCGCCTC 804
consensus_1981#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |