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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence
[AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAGCTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACATCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG]
[+] EMBL CA331806 [AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTCCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGC ]
[+] EMBL CA331010 [ GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGTTGGAGCGAAGCTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACATCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG]
[-] EMBL FR0056750 [ ATCATGATATGACATTTACTTCCTAGATCAGTGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTATAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAAGTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCCGGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAGCTGGCTTCCAGCAGGCCGGG ]
consensusID : consensus_1996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT]
[-] EMBL CA333628 [TTTTTTTTTTTTAATTTGAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTTTTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGGTCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGTGAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCTCATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAAAATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1996#0 AAATCCATTTATTGATGTCTGCGGGAAAGAACATGACTTAAAAAACAAGGCACATAATTT 60
consensus_1996#1 -------------------------------------------TTTTTTTTTTTTAATTT 17
******
consensus_1996#0 GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT 120
consensus_1996#1 GAATTATTTTATTCCATTAACAGACCTCAACAGTGAACCTTTTAGGATGTGCCTTCTGTT 77
************************************************************
consensus_1996#0 TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGTGG 180
consensus_1996#1 TTTCTTTTTACAACACTCTTCAGCAGATCATGATATGACATTTACTTCTTAGATCAGAGG 137
********************************************************* **
consensus_1996#0 TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT 240
consensus_1996#1 TCTTCAGAAGAATAAGGAACTACTGATTGGACAGGAAAACAACATCAGATGTGGTTGTGT 197
************************************************************
consensus_1996#0 GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT 300
consensus_1996#1 GAAAGCATTGCGGTGGTGAACAATGTTCCTTTAGATTGTCTTGCACACTCTGTAGCAGCT 257
************************************************************
consensus_1996#0 CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA 360
consensus_1996#1 CATCCCCAAAGGTGTCATATTACGTGAATATCTCCTTTTCCCCGCTTCATTTCAGAACAA 317
************************************************************
consensus_1996#0 AATCTCAATCAAGCAAATGGATTCCCAAATGGATCTCCAAATGCATCCGTTGATCCCAAA 420
consensus_1996#1 AATCTCAATCAAGCAAATGGAAACCCAAATGGATCTCCAAATGCAT-------------- 363
********************* ***********************
consensus_1996#0 GTCTGACCACCAGCAGCCGTTTGCGTAGCTACTGGCGGCGCACTGAATGGACTGGAGGCC 480
consensus_1996#1 ------------------------------------------------------------
consensus_1996#0 GGTGCGCCGAAGGCTTGATCGAACATGTCTTTGCTGTTAGCGGCAGGAGCTGGAGCGAAG 540
consensus_1996#1 ------------------------------------------------------------
consensus_1996#0 CTGGCTTCCAGCAGGCCGGGGCTGAAGGCCTGAGCTGCAGCAGGAGCCAGCGTTTGGACA 600
consensus_1996#1 ------------------------------------------------------------
consensus_1996#0 TCTTTAAGTGGCGGCGACATTTGGTTGATGTCAAAGTCGTCGTGGTCTGCGGTCTCCTG 659
consensus_1996#1 -----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |