Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1998 cluster # 1998       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1998#0 length = 645 sequences # 3  
 consensus_1998#1 length = 527 sequences # 1  
consensusID : consensus_1998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 645
fasta sequence 
                              [GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGCTAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTACACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT]

[+] EMBL CA590451             [GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGCTAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTACACATCACTAAAGATTTAGGC                        ]
[+] EMBL BU806663             [                  AAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGCTAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTACACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT]
[+] EMBL FR0060595            [                                                                                              CTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGGGTTCCTAAACGTAGAAGCTCGTCCAGGTCAATAAAGAGGAAAAAGTTTGACGAT                                                                                                                                                                                                                                                            ]




>consensus_1998#0
GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGC
TAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAG
CTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTC
TATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCA
CCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAA
GATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCG
TCCAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAG
TCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAG
CCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCACACCGCCTCTC
ACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGCAAACAACCTCTA
CACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT

consensusID : consensus_1998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence 
                              [AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTTTGAACAAAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAATTTGGTCTCTGTATTAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCA]

[+] EMBL CA589769             [AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTTTGAACAAAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAATTTGGTCTCTGTATTAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCA]




>consensus_1998#1
AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAGCTAGTACATATTTA
TCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTCTATCGCAAAGAAGC
CAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCACCAATGGGGGTCAC
TGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAAGATGTAAAAAGGAC
AGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCGTCCAGGTTTGAACA
AAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAATTTGGTCTCTGTAT
TAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGCAGTTTAGTGAAGTC
CTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGTTCAGGGAGCGAGCC
TTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1998#0      GTGTTTGTCAAACATAATAAAACCTCGCAGAAGGAAAAAGGCCGACGGTGCAGCTAATGC 60
consensus_1998#1      ------------------------------------------------------------
                                                                                  

consensus_1998#0      TAACATGTGTACAGAGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAG 120
consensus_1998#1      --------------AGAGCGATACTAAACATTTACTGTAGATACTTAGTCATGTAGCTAG 46
                                    **********************************************

consensus_1998#0      CTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTC 180
consensus_1998#1      CTAGTACATATTTATCAGGACCAATTATAGACCGTTGTAACTCCAGACCACGGAATTTTC 106
                      ************************************************************

consensus_1998#0      TATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCA 240
consensus_1998#1      TATCGCAAAGAAGCCAGATATCAAGAAATGATGCAGGCTGGTGACCCTGTGGTTGGGTCA 166
                      ************************************************************

consensus_1998#0      CCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAA 300
consensus_1998#1      CCAATGGGGGTCACTGGTGCCCAGAGTCGATCTGAGGATGAAGAGTCGCTTGGAGTAAAA 226
                      ************************************************************

consensus_1998#0      GATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCG 360
consensus_1998#1      GATGTAAAAAGGACAGCAGCACAAGCTTTTGGAAGTGGTGTTCCTAAACGTAGAAGCTCG 286
                      ************************************************************

consensus_1998#0      TCCAGGT----------------------------------------------------- 367
consensus_1998#1      TCCAGGTTTGAACAAAACTTTTCTTTTTGTGCTGAAACCTTTTGAGCACCAAAACCAGAA 346
                      *******                                                     

consensus_1998#0      -------------------CAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGC 408
consensus_1998#1      TTTGGTCTCTGTATTAGGTCAATAAAGAGGAAAAAGTTTGACGATGAGCTGGTGGAGAGC 406
                                         *****************************************

consensus_1998#0      AGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGT 468
consensus_1998#1      AGTTTAGTGAAGTCCTCCAGTCGAGTCAAAGGCACGCCTGTCATAGAGCCTGTCCGCTGT 466
                      ************************************************************

consensus_1998#0      TCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTC 528
consensus_1998#1      TCAGGGAGCGAGCCTTCATCTACTGAGAAGAAGAAGCTAACAAAATCAGGAGGCGTTCTC 526
                      ************************************************************

consensus_1998#0      ACACCGCCTCTCACCATGGTAGTAAACCCTGCACCCATCACTAAAAGAGTGAAAAAAAGC 588
consensus_1998#1      A----------------------------------------------------------- 527
                      *                                                           

consensus_1998#0      AAACAACCTCTACACATCACTAAAGATTTAGGCCGGTGGAAATCCACCGATGACCTT 645
consensus_1998#1      ---------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)