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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence
[TTCGTCTTTTCTGAAGAAAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCTTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCTCGAGCCTGCAGACTGCAGTGAGGTCACTGACTTTAGTGACCTCACTGGCAATGTCAGTGAGGTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGCAACTGATAATGGAGGCTGGACTGTGATCACTAGTAGAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAAGGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTGGACAACATCTACTACTTGGGCGAGTAGTAAACAATATGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGGAGGAGCAGGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCACCCTTGGACAGAGACAACGACCTTTTAGACAAGGAAAACTGTGCCAGGAAATACCTGGGAGCCTTCTGGTACAATAAATGTCACACTACAAACCCCAATGGGGTGTATCGCTGGGGCGCCGATGGTACTCTTTTCGCTGTTGGGGTCAGCTGGTATCCTTGGAAGGGTCATGACTACTCACTGAAGTCATTCATCATGATGATCCGTCCTGTCCAGTAGAGCTTTAGGGTCAATGCTCAGCAAAACCTTTTCTTCTTCTCTAAGATAGTCTGTAGCAGAGTGTGTGATTACCTCTTGATTCTCTTCTAGTCACTTCGGCAAAGATTTGAATTGTGATTTCAGATACCTAATGTATCATAACATCAATCAATAAATAATCAATAAATATATTGAGCAAA]
[+] EMBL CA589150 [TTCGTCTTTTCTGAAGAAAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCTTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCTCGAGCCTGCAGACTGCAGTGAGGTCACTGACTTTAGTGACCTCACTGGCAATGTCAGTGAGGTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGCAACTGATAATGGAGGCTGGACTGTGATCACTAGTAGAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAAGGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTT GACGAGTAGTAAACAATATGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGGAAGAGCAAGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCACCCTTGGACAG ]
[-] EMBL CA332389 [ GGTCTGGACACCATTTACTTCTTGGGCGAGTAGTAAACAATATGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGGAGGAGCAGGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCA CCTTGGACAGAGACAACGACCTTTTAGACAAGGAAAACTGTGCCAGGAAATACCTGGGAGCCTTCTGGTACAATAAATGTCACACTACAAACCCCAATGGGGTGTATCGCTGGGGCGCCGATGGTACTCTTTTCGCTGTTGGGGTCAGCTGGTATCCTTGGAAGGGTCATGACTACTCACTGAAGTCATTCATCATGATGATCCGTCCTGTCCAGTAGAGCTTTAGGGTCAATGCTCAGCAAAACCTTTTCTTCTTCTCTAAGATAGTCTGTAGCAGAGTGTGTGATTACCTCTTGATTCTCTTCTAGTCACTTCGGCAAAGATTTGAATTGTGATTTCAGATACCTAATGTATCATAACATCAATCAATAAATAATCAATAAATATATTGAGCAAA]
consensusID : consensus_2009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[ACCCAGCTTCTTGCAAGTATGATGGACCAGAGAGCTAAATTACATTTGATTTTGATGTTTTGCAGAGAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATTGTCAGTGGAATCTACCCCATCTATCCTGCTGGACACGGGTCTGAGATACCAGTTTTCTGTGACATGGAAACTGATAATGGAGGCTGGACTGTGATCACTAGTATAATCTATGGAGAACTCAACTTCTACAGACCCTGGAACCATTACAAGGTTGGTTTCGGTACGCCTGCTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTTGACGAGTAGTAAACAATATGAGCTTCTAGTGCTGTTGGAGGACTTTGCAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCCCTGGTGGGGATGAAGCTCTGGATATCAACCTGACTGTTGGAGACTTTCCTGATGGAGGACCAGGA]
[+] EMBL CA591226 [ACCCAGCTTCTTGCAAGTATGATGGACCAGAGAGCTAAATTACATTTGATTTTGATGTTTTGCAGAGAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATTGTCAGTGGAATCTACCCCATCTATCCTGCTGGACACGGGTCTGAGATACCAGTTTTCTGTGACATGGAAACTGATAATGGAGGCTGGACTGTGATCACTAGTATAATCTATGGAGAACTCAACTTCTACAGACCCTGGAACCATTACAAGGTTGGTTTCGGTACGCCTGCTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTTGACGAGTAGTAAACAATATGAGCTTCTAGTGCTGTTGGAGGACTTTGCAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCCCTGGTGGGGATGAAGCTCTGGATATCAACCTGACTGTTGGAGACTTTCCTGATGGAGGACCAGGA]
consensusID : consensus_2009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TGCTTTCACCCCAAGTCCCAGCATGACGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGGCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATCAGTGACCTCACTGACAATGTCAGTGAGGACAGTGAGCGTTTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGGAACTGATAATGGAGGCTGGACTGTGATCACTAGTACAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAACGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTTGACAACATCCT]
[+] EMBL FR0055385 [TGCTTTCACCCCAAGTCCCAGCATGACGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGGCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATCAGTGACCTCACTGACAATGTCAGTGAGGACAGTGAGCGTTTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGGAACTGATAATGGAGGCTGGACTGTGATCACTAGTACAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAACGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTTGACAACATCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2009#0 -------------------------------------------------TTCGTCTTTTC 11
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ACCCAGCTTCTTGCAAGTATGATGGACCAGAGAGCTAAATTACATTTGATTTTGATGTTT 60
consensus_2009#0 TGAAGAAAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAG 71
consensus_2009#2 --------------------------------TGCTTTCACCCCAAGTCCCAGCATGACG 28
consensus_2009#1 TGCAGAGAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAG 120
************************** *
consensus_2009#0 GGATCACTCGTCTTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCTC 131
consensus_2009#2 GGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGGCAGTGGTCAACCAAATCCC 88
consensus_2009#1 GGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCCC 180
************ *************************** ***************** *
consensus_2009#0 GAGCCTGCAGACTGCAGTGAGGTCACTGACTTTAGTGACCTCACTGGCAATGTCAGTGAG 191
consensus_2009#2 GAGCCTGCAGACTGCAGTGAGGTCACTGACATCAGTGACCTCACTGACAATGTCAGTGAG 148
consensus_2009#1 GAGCCTGCAGACTGCAGTGAGGTCACTGACATTG----------------------T--- 215
****************************** * *
consensus_2009#0 G------------TCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACG 239
consensus_2009#2 GACAGTGAGCGTTTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACG 208
consensus_2009#1 --------------CAGTGGAATCTACCCCATCTATCCTGCTGGACACGGGTCTGAGATA 261
********* **********************************
consensus_2009#0 TTGGTTTTCTGTGACATGGCAACTGATAATGGAGGCTGGACTGTGATCACTAGTAGAATG 299
consensus_2009#2 TTGGTTTTCTGTGACATGGGAACTGATAATGGAGGCTGGACTGTGATCACTAGTACAATG 268
consensus_2009#1 CCAGTTTTCTGTGACATGGAAACTGATAATGGAGGCTGGACTGTGATCACTAGTATAATC 321
**************** *********************************** ***
consensus_2009#0 GATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAAGGTTGGTTTCGGTATGCCT 359
consensus_2009#2 GATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAACGTTGGTTTCGGTATGCCT 328
consensus_2009#1 TATGGAGAACTCAACTTCTACAGACCCTGGAACCATTACAAGGTTGGTTTCGGTACGCCT 381
***************************** ********** ************* ****
consensus_2009#0 ACTTCAGAGTACTGGATCGGTCTGGACAACATCTACTACTTGGGCGAGTAGTAAACAATA 419
consensus_2009#2 ACTTCAGAGTACTGGATCGGTCTTGACAACATCCT------------------------- 363
consensus_2009#1 GCTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTTGA-CGAGTAGTAAACAATA 440
********************** *********
consensus_2009#0 TGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTC 479
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 TGAGCTTCTAGTGCTGTTGGAGGACTTTGCAGGCAAAACTGTGTATGCTTACTATGGTTC 500
consensus_2009#0 CTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGG 539
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 CTTCCCTGGTGGGGATGAAGCTCTGGATATCAACCTGACTGTTGGAGACTTTCCTGATGG 560
consensus_2009#0 AGGAGCAGGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCACCCTTGGACAGAG 599
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 AGGACCAGGA-------------------------------------------------- 570
consensus_2009#0 ACAACGACCTTTTAGACAAGGAAAACTGTGCCAGGAAATACCTGGGAGCCTTCTGGTACA 659
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ------------------------------------------------------------
consensus_2009#0 ATAAATGTCACACTACAAACCCCAATGGGGTGTATCGCTGGGGCGCCGATGGTACTCTTT 719
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ------------------------------------------------------------
consensus_2009#0 TCGCTGTTGGGGTCAGCTGGTATCCTTGGAAGGGTCATGACTACTCACTGAAGTCATTCA 779
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ------------------------------------------------------------
consensus_2009#0 TCATGATGATCCGTCCTGTCCAGTAGAGCTTTAGGGTCAATGCTCAGCAAAACCTTTTCT 839
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ------------------------------------------------------------
consensus_2009#0 TCTTCTCTAAGATAGTCTGTAGCAGAGTGTGTGATTACCTCTTGATTCTCTTCTAGTCAC 899
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ------------------------------------------------------------
consensus_2009#0 TTCGGCAAAGATTTGAATTGTGATTTCAGATACCTAATGTATCATAACATCAATCAATAA 959
consensus_2009#2 ------------------------------------------------------------
consensus_2009#1 ------------------------------------------------------------
consensus_2009#0 ATAATCAATAAATATATTGAGCAAA 984
consensus_2009#2 -------------------------
consensus_2009#1 -------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |