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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 485 fasta sequence
[TGGTTTTGGTTTGAATGAGTGGGGGAGGGGGTGTAGCTTATCTGGAACCTTTGGGCGTAGCACTGTCCAGCTCTGGCTTTTAGCTCCTGTGTGAATTTGAGTTTTTTCCTCCCAACAGCTGGAATAGTGGTCTTCACCTAACAAAAGCCCCCCACCCCTCCCAGCATGTCAAGAAAATTTAGCAATTTTGTCTCCTGATATCTGAAACAAAAGTGATTTCCCCACCTGGCTGTCTCTGAGGTTGGAGGGGCAGTTAACACTCAAGCTTCTGATCCACCGGGGGTAGTAGTGTCCAACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTAGTGGTGTGGGCCTCCAACATGTGGGAGGCAGTTTGTAGTGAGGCGTGTTT-CTCTCGAGGGACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACCTGACTGGAAAT]
[-] EMBL CA332346 [TGGTTTTGGTTTGAATGAGTGGGGGAGGGGGTGTAGCTTATCTGGAACCTTTGGGCGTAGCACTGTCCAGCTCTGGCTTTTAGCTCCTGTGTGAATTTGAGTTTTTTCCTCCCAACAGCTGGAATAGTGGTCTTCACCTAACAAAAGCCCCCCACCCCTCCCAGCATGTCAAGAAAATTTAGCAATTTTGTCTCCTGATATCTGAAACAAAAGTGATTTCCCCACCTGGCTGTCTCTGAGGTTGGAGGGGCAGTTAACACTCAAGCTTCTGATCCACCGGGGGTAGTAGTGTCCAACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTAGTGGTGTGGGCCTCCAACATGTGGGAGGCAGTTTGTAGTGAGGCGTGTTT CTCTCGAGGGACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACCTGACTGGAAA ]
[+] EMBL FR0056063 [ ATTTCCCCACCTGGCTGTCTCTGAGGTTGGAGGGGCAGTTAACACTCAAGCTTCTGATCCACCGGGGGTAGTAGTGTCCAACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTAGTGGTGTGGGCCTCCAACATGTGGGAGGCAGTTTGTAGTGAGGCGTGTTTCCTCTCGAGGGACTCCATCAGGTTGTGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGC ]
[+] EMBL CA340997 [ GTAGTGAGGCGTGTTT CTCTCGATGGACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACCTGACTGGAAAT]
consensusID : consensus_2033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[TAAAAGTGTTTATTTCTTGTTCTCTACCAGAAGGTTTAGAACCACCACATAAATGGAACACACCCAAAACATTATGAAGGTTAATAATTATACAATGTCAAACAGCCAACGTGCTCTGCAATGAAGGGCTGGGGAAAACATCAGTTTCAGAAAACCCTGAAGCTGCCAAAAGAATTTGAAAGATTTAATGATCATTTTCTCACAAATACACCAGATAGCAAAACGGGTTTTTTTTTTTTTAAATCATGCATTTATCAACTTTGAGGAAAAAAAACTCATTTGCATTTACTAATAAAAGATACATTAGACATCAGACAGCGCGTGTGATTGTTGTCAATTCCGTTTTATTTTATATTTTTTTTGCCATTTCCAGTCAGGTGACAAAGGCCTCGAGTGAAGTTTGCAGCTCTACCACCCTCCCCAAC]
[+] EMBL CA331600 [TAAAAGTGTTTATTTCTTGTTCTCTACCAGAAGGTTTAGAACCACCACATAAATGGAACACACCCAAAACATTATGAAGGTTAATAATTATACAATGTCAAACAGCCAACGTGCTCTGCAATGAAGGGCTGGGGAAAACATCAGTTTCAGAAAACCCTGAAGCTGCCAAAAGAATTTGAAAGATTTAATGATCATTTTCTCACAAATACACCAGATAGCAAAACGGGTTTTTTTTTTTTTAAATCATGCATTTATCAACTTTGAGGAAAAAAAACTCATTTGCATTTACTAATAAAAGATACATTAGACATCAGACAGCGCGTGTGATTGTTGTCAATTCCGTTTTATTTTATATTTTTTTTGCCATTTCCAGTCAGGTGACAAAGGCCTCGAGTGAAGTTTGCAGCTCTACCACCCTCCCCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2033#0 TGGTTTTGGTTTGAATGAGTGGGGGAGGGGGTGTAGCTTATCTGGAACCTTTGGGCGTAG 60
consensus_2033#1 -----------------------------------------TAAAAGTGTTTATTTCTTG 19
* *** * *
consensus_2033#0 CACTGT-CCAGCTCTGGCTTTTAGCTCCTGTGTGAATTTGAGTTTTTTCCTCCCAACAGC 119
consensus_2033#1 TTCTCTACCAGA--AGGTTTAGAACCACCACATAAATGGAA----CACACCCAAAACATT 73
** * **** ** ** * * * * *** * * * ****
consensus_2033#0 TGGAATAGTGGTCTTCACCTAACAAAAGCCCCCCACCCCTCCCAGCATGTCAAGAAAATT 179
consensus_2033#1 ATGAAGGTTAATAATTATACAATGTCAAACAGCCAACGTGCTCTGCA----ATGAAGGGC 129
*** * * * * ** * * *** * * * *** * ***
consensus_2033#0 TAGCAATTTTGTCTCCTGATATCTGAAACAAAAGTGATTTCCCCACCTGGCTGTCTCTGA 239
consensus_2033#1 TGGGGAAAACATCA------GTTTCAGAAAACCCTGAAGCTGCCAAAAGA--ATTTGAAA 181
* * * ** * * * * ** *** *** * * * *
consensus_2033#0 GGTTGGAGGGGCAGTTAA-CACTCAAGCTTCTGATCC---ACCGGGGGTAGTAGTGTCCA 295
consensus_2033#1 GATTTAATGATCATTTTCTCACAAATACACCAGATAGCAAAACGGGTTTTTTTTTTTTTA 241
* ** * * ** ** *** * * * *** * **** * * * * *
consensus_2033#0 ACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTA 355
consensus_2033#1 AATCATGCATTTATCAACTTTGAGGAAAAAAAACTCATTTGCATTTAC---TAATAAAAG 298
* * * *** * *** *** * * * *
consensus_2033#0 GTGGTGTGGGCCTCCAACA-TGTGGGAGGCAGTTTGTAGTGAGGCGTGTTTCTCTCGAGG 414
consensus_2033#1 ATACATTAGACATCAGACAGCGCGTGTGATTGTTGTCAATTC--CGTTTTATTTTATATT 356
* * * * ** *** * * * * *** * * *** ** * * *
consensus_2033#0 GACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACC 474
consensus_2033#1 TTTTTTGCCATTTCCAGTCAGGTGACAAAGGCCTCGAGTGAAGTTTGCAGCTCTACCACC 416
* ** * * **** * ** * * * * ** * ****
consensus_2033#0 TGACTGGAAAT 485
consensus_2033#1 CTCCCCAAC-- 425
* *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |