cluster # 2035

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Takifugu rubripes
cluster # 2035 cluster # 2035 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2035#0 length = 647 sequences # 2

consensus_2035#1 length = 377 sequences # 1
consensus_2035#2 length = 153 sequences # 1

consensusID : consensus_2035#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGAAAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAACACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGCTGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATGATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTAGAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA]

[-] EMBL CA332551             [AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGAAAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAACACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGCTGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATGATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTAGAAATGACCTCCCAATCATACTCTTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACT                                                     ]
[+] EMBL FR0055216            [                                                                                                                                                                                                                                                                                                                                  ATTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA]




>consensus_2035#0
AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGA
AAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAAC
ACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGC
TGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATG
ATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTA
GAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATT
TTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCT
CTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTC
CAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGG
TCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAA
ATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA

consensusID : consensus_2035#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATT]

[+] EMBL CA844805             [ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATT]




>consensus_2035#1
ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGG
AAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTC
AACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACT
CCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAAC
CATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATT
GAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGT
TGGTTTAACCAAACATT

consensusID : consensus_2035#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 153
fasta sequence

                              [TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA]

[+] EMBL CA845690             [TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA]




>consensus_2035#2
TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAA
ACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTT
GTGGAAAACGCCCCAGGTTTCATAATAAAGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2035#0      AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGA 60
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      AAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAAC 120
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      ACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGC 180
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      TGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATG 240
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      ATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTA 300
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      -----------------------------------ATGTAGCCCTTGTGTTTTAAATGTG 25
                                                                                  

consensus_2035#0      GAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATT 360
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTC 85
                                                                                  

consensus_2035#0      TTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCT 420
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      TTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTA 145
                                                                                  

consensus_2035#0      CTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTC 480
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      CGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTG 205
                                                                                  

consensus_2035#0      CAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTG-TGGTGAAGT-CAGACA 538
consensus_2035#2      --------------TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACA 46
consensus_2035#1      AAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAG----GTTCAGTCA 261
                                     *  ** *     *******    ** *  * *     * *** **

consensus_2035#0      GGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAAT--AAAATCTAAATG----ATA 592
consensus_2035#2      GGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAAT--AAAATCTAAATG----ATA 100
consensus_2035#1      T-CCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACA 320
                         *** *        * * *  **    *  **** **  *** *** **      * *

consensus_2035#0      CTG-TAAAAATGTAAA---AAAAAAAGAAAAAT-CAAAAAAAACAAAAATAATACTGTAA 647
consensus_2035#2      CTG-TAAAAATGTAGA---ACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA--- 153
consensus_2035#1      CTGGTCAGAAAGTGAACAAACAATTTGGGGGGC-CTTCAGTTGGTTTAACCAAACATT-- 377
                      *** * * ** **  *   *      *       *   *        **  *  *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)