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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 857 fasta sequence
[CATACAGGACGGAGACATGGAGGGGAGTCATTCGCACCTGACGGTGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGTCGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAGACAGTCTACCAGTTCAACGTCAGTGAGCTGTCTCCTGAGAACACAGTGTTGGGACGGGTTGAGGCCCAGGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCTCTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAAAAACGTCTCGCTCACGTTGTTCGTTCAGGACACGTTGCCTGGTGTCAGTCCATCCTACAACACCTCCACCACTATAGAGATTACCATTCTTGACGTGGACAATAGGCCGCCTTGGTTCCAGCCCTGCACCGTGTACGAGGCCGGGACCAATCTGATCTGCTCCAGCTCTGGTTACACTGGCCGGGTCACCTTAAATAAGAAAGAGACTGAACCTTTAAAGCTGAATCCTGGACCCCTATATGCCATCGATGGGGACTCTGGGATTAATG]
[+] EMBL CA589848 [CATACAGGACGGAGACATGGAGGGGAGTCATTCGCACCTGACGGTGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGTCGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAGACAGTCTACCAGTTCAACGTCAGTGAGCTGTCTCCTGAGAACACAGTGTTGGGACGGGTTGAGGCCCAGGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCTCTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAAAAACGTCTCGCTC ]
[+] EMBL CA589834 [ CAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGTCGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAGACAGTCTACCAGTTCAACGTCAGTGAGCTGTCTCCTGAGAACACAGTGTTGGGACGGGTTGAGGCCCAGGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCTCTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAAAAACGTCTCGCTCACGTTGTTCGTTCAGGACACGTTGCCTGGTGTCAGTCCATCCTACAACACCTCCACCACTATAGAGATTACCATTCTTGACGTGGACAATAGGCCGCCTTGGTTCCAGCCCTGCACCGTGTACGAGGCCGGGACCAATCTGATCTGCTCCAGCTCTGGTTACACTGGCCGGGTCACCTTAAATAAGAAAGAGACTGAACCTTTAAAGCTGAATCCTGGACCCCTATATGCCATCGATGGGGACTCTGGGATTAATG]
consensusID : consensus_2050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence
[TGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGGCTGCCAAAAACCCGCAAGCAGTCCGGTAAAATTTCATCTTAAAATTAAGTGAGCGATAAATTGCGTCTTTCTGTTGGGGATACATTTCACTTCCTGACCCCTTAATGCCTACGNGGGATGGGGTCCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCTCGAGGGCCACAATCCAACCGGGTTTTCTGTCCTCCCAGGCAGCTTTCACCATGGCAAGTGGAAACTCAGGTGGATCCCTCTGGATTGCGGGCCTCGAGGAATGGGGCTACCCCCCAGCATTGTTGGCTGTTTTCTTTAAAAAAAAAACAAAGAACCTATTGACAGTGTTTTTCTTTGACTCCCAAGTTCCTTCAGCGTTACCGCACTCCTGGCCAATGGGAACGACAACCCTTCCAGGGTTCAACAAGAGTCTACCCAGCCCAACGGCAGTGAACTGGCTCCTGAAAACACCGGGATGGGACAGGGCGGGGCCCCCGATTTCGACAAGGTTGGTATTAACTTCCGACTGGACGGACAACAA]
[+] EMBL FR0059311 [TGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGTTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGAACTGGGCTGC ]
[+] EMBL CA588294 [ AAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTAAAATTTCATCTTAAAATTAAGTGAGCGATAAATTGCGTCTTTCTGTTGGGGATACATTTCACTTCCTGACCCCTTAATGCCTACGNGGGATGGGGTCCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCTCGAGGGCCACAATCCAACCGGGTTTTCTGTCCTCCCAGGCAGCTTTCACCATGGCAAGTGGAAACTCAGGTGGATCCCTCTGGATTGCGGGCCTCGAGGAATGGGGCTACCCCCCAGCATTGTTGGCTGTTTTCTTTAAAAAAAAAACAAAGAACCTATTGACAGTGTTTTTCTTTGACTCCCAAGTTCCTTCAGCGTTACCGCACTCCTGGCCAATGGGAACGACAACCCTTCCAGGGTTCAACAAGAGTCTACCCAGCCCAACGGCAGTGAACTGGCTCCTGAAAACACCGGGATGGGACAGGGCGGGGCCCCCGATTTCGACAAGGTTGGTATTAACTTCCGACTGGACGGACAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2050#0 CATACAGGACGGAGACATGGAGGGGAGTCATTCGCACCTGACGGTGACCACCTTCTTGGC 60
consensus_2050#1 --------------------------------------------TGACCACCTTCTTGGC 16
****************
consensus_2050#0 TTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATC 120
consensus_2050#1 TTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATC 76
************************************************************
consensus_2050#0 TAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACAT 180
consensus_2050#1 TAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACAT 136
************************************************************
consensus_2050#0 CCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTT 240
consensus_2050#1 CCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTT 196
************************************************************
consensus_2050#0 AAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTAC 300
consensus_2050#1 AAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTAC 256
************************************************************
consensus_2050#0 CGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGT 360
consensus_2050#1 CGCTGGACTGGGCTGCCAAAAACCCGCAAGCAGTCCGGTAAAATTTCATCTTAAAATTAA 316
*********** *************************** ** *** *
consensus_2050#0 CGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAG---ACAGTCTACCAGTTCAA 417
consensus_2050#1 -GTGAGCGAT--AAATTGCGTCTTTCTGTTGGGGATACATTTCACTTCCTGACCCCTTAA 373
*** * ** ** * * ** ** *** ** ** * * **
consensus_2050#0 CGTCAGTGAGCTGT----CTCCTGAGAACACAGTGTTGGGACGGG-----TTGAGGCCCA 468
consensus_2050#1 TGCCTACGNGGGATGGGGTCCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCTCGAGGGCCA 433
* * * * * ** ** * **** * * * **** ***
consensus_2050#0 GGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCT 528
consensus_2050#1 CAATCCAACCGGGTTTTCTGTCCTCC-CAGGCAGCTTTCACCA--TGGCAAGTGGAAACT 490
** * * * ** * ** * *** * * * * * ** * ** **
consensus_2050#0 CTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAA 588
consensus_2050#1 CAGGTGGATCCCT---CTGGAT-------TGCGGGC-CTCGAGGAATGGGGCTACCCCCC 539
* ** ** * *** * * * * ** *** * * * * *
consensus_2050#0 AAACGTCTCGCTCACGTTGTTCGTTCAGGACACGTTG--CCTGGTGTCAGT-CCATCCTA 645
consensus_2050#1 AGCATTGTTGGCTGTTTTCTTTAAAAAAAAAACAAAGAACCTATTGACAGTGTTTTTCTT 599
* * * * ** ** * * ** * *** ** **** * **
consensus_2050#0 CAACACCTCCACCACTATAGAGATTACCATTCTTGACGTGGACAATAGGCCGCCTTGGTT 705
consensus_2050#1 TGACTCCCAAGTTCCTTCAGCG-TTACCGCACT---CCTGGCCAATGGG-------AACG 648
** ** ** ** * ***** ** * *** **** **
consensus_2050#0 CCAGCCCTGCACCGTGTACGAGGCCGGGACCAATCTGATCTGCTCCAGCTCTGGTTACAC 765
consensus_2050#1 ACAACCCTTC-CAGGGTTCAA--CAAGAGTCTACCCAGCCCA--ACGGCAGTGAACTGGC 703
** **** * * * ** * * * * * * * * * ** ** *
consensus_2050#0 TGGCCGGGTCACCTTAAATAAGAAAGAGACTGAACCTTTAAAGCTGAATCCTGGACCCCT 825
consensus_2050#1 TCCTGAAAACACCG-GGATGGGACAG-GGCGGGGCCCCCGATTTCGA---CAAGGTTGGT 758
* **** ** ** ** * * * ** * ** * * *
consensus_2050#0 ATATGCCATCGATGGGGACTCTGGGATTAATG 857
consensus_2050#1 ATTAACTTCCGACTGGA---CGGACAACAA-- 785
** * *** ** * * * **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |