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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 590 fasta sequence
[ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATGCGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC-GGATATTTTTTTCCCCCCAAAACGGAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTTCCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG]
[+] EMBL CA329889 [ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATGCGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC GGATATTTTTTTCCCCCCAAAACGGAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTTCCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG]
[+] EMBL FR0057690 [ AAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC GGATATTTTTTCCC ]
[+] EMBL FR0057526 [ TGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAGAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGCTTGCCATTTTAGCACAGGTTTTGACAACCTTTTTTTCTGTCTGGGCAGAATACGGGATATTTTTTTCCCCCCAAA ]
consensusID : consensus_2062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 60 fasta sequence
[CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA]
[+] EMBL CA333395 [CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2062#0 ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATG 60
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 CGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCA 120
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 GATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCAT 180
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 GATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCA 240
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 AGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAA 300
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 TGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCT 360
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 TAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAG 420
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 TTTTTGACAACCTTTTTTTCTGTCTGGACATAATACGGATATTTTTTTCCCCCCAAAACG 480
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 GAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTT 540
consensus_2062#1 ------------------------------------------------------------
consensus_2062#0 CCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG---------- 590
consensus_2062#1 -CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAA 59
*************************************************
consensus_2062#0 -
consensus_2062#1 A 60
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |