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Takifugu rubripes
cluster # 2069 cluster # 2069       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2069#0 length = 638 sequences # 2  
 consensus_2069#1 length = 613 sequences # 2  
consensusID : consensus_2069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence 
                              [TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCCACACGTACACATTTTTGCTAGCAACAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCTCCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAATCCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTTCTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCCAGGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTGTGGTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCGGGGGCCACAGGCGAGTCGACAGACGAGAAGACGGACAGTTTGGCCTCGTCCACGTCCTGCTGGGTGAACTGGCCCGAACTGGCCCAGTCCACACTTTC]

[+] EMBL CA331205             [TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCTACACGTACACATTTTTGCTAGCAACAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCTCCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAATCCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGTTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCT CCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTTTAAATTGGATTATTTGATAATCCAGGACGGATCTTTCTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCCAGGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTGTGGTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCGGGGGCCACAGGCGAGTCGACAGACGAAAAGACGGACAGTTTGGCCTCGTCCACGTCCTGCTGGGTGAACTGGCCCCAACTTGCCCAATCCACACTTTC]
[+] EMBL CA329862             [            TGCAAATAGTTTTAATTTTGATCCACACGTACACATTTTTGCTAGCAACAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCTCCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAATCCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACATTTGTTTCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTTCTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCCAAGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTGTGTTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCGGGGGCCACAGGCGAGTCGACAGACGAGAAAACGGACAGTTTGGCCTCGTCCACGTCCTGCTGGGTGAACTGTCCCGACTTGGCCCAGTCCAC      ]




>consensus_2069#0
TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCCACACGTACACATTTTTGCTAGCAA
CAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCT
CCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAAT
CCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGC
GCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAG
CGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTTC
TGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACCC
AGGTACCTTTCTGCTGCCTCCACCAGGTTTCTGTGATTAACGGCGAAGAGTTTTTCTCTG
TGGTGCTGCTTCATCTGGTCCGTGACTCCACTCAGGAAACGACTCATTCCTTTGTCTGCG
GGGGCCACAGGCGAGTCGACAGACGAGAAGACGGACAGTTTGGCCTCGTCCACGTCCTGC
TGGGTGAACTGGCCCGAACTGGCCCAGTCCACACTTTC

consensusID : consensus_2069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 613
fasta sequence 
                              [TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCAGAAAAGAATCTTTATTTTAGGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCAGAGCCGAGGTTGTGTTCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTAAGTGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT]

[-] EMBL CA332485             [TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTCCCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCAGAAAAGAATCTTTATTTTAGGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCAGAGCCGAGGTTGTGTTCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTAAGTGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT]
[+] EMBL FR0062314            [                                                                                                                                                                                                                                                                                          TGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT]




>consensus_2069#1
TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGCGCACGTGCGA
CCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACAGCGCCAGTGTC
CCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCAGAAAAGAATCTTTATTTTA
GGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCAGAGCCGAGGTTGTGT
TCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTAAGTGAAAGTGTAGCTTATTT
AAATATTTAGGGGATTGTAGCACAGCGAGCCGACGGTGGCTGATAGATTTAAGCACTTTG
AACCACAGTAACGCTGCTGAGTGTTTATGGCAGAAGCTTCACGCCTCGGTTGTCGAGTCG
CTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTCTCTGCCGCTGTGATCCATCCTG
GGCTTTCGTACGTGGTGGCATTCCACTAACCCTAACCCTGTGTGGGGCCGGTGCGGAGGA
CGGCTACAAGTTGTGTGCAACATTAACTTTGTGTGCAACATTAACTTTGTGCGACGGCAG
CGTGACGTGTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2069#0      TTTTTTGAGGGGTGCAAATAGTCCTAATTTAGATCCACACGTACACATTTTTGCTAGCAA 60
consensus_2069#1      -TACAAGACGAGCTACGACGTGTCCGACGCCGGTCAGCTGGAACACGTGGC-GCACGTGC 58
                       *    ** * *     *     *  *    * **  *  * **** *    **  *   

consensus_2069#0      CAAGACAAAGCATCTGAAATACTGAGTGTGAAATAACGGTCTTCAACTTCCTGTTTTCCT 120
consensus_2069#1      GACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGC-----TCCCCCCCCCGACAGCGC 113
                       *    **  ** *      **    **   *  * *     **  *  ** *    *  

consensus_2069#0      CCTCAGTCACAGGGTCCCCAGGGACCAGTGGTGGCTGAAGCTCCGCCCCGTGATGAAAAT 180
consensus_2069#1      CAGTGTCCCCGAACCAGCTGCAGATCATTAGAAGTTACAGATTAGTCA---GAAAAGAAT 170
                      *      * *       *    ** ** * *  * *  ** *  * *    **  * ***

consensus_2069#0      CCTGGCCAAGTACAAGACGAGCTACGACGTGTCCGA-CGCCGGTCAGCTGGAACACGTGG 239
consensus_2069#1      CTTTATTTTAGGAAATGACAGAAGAAACTTGCCAGAATGTTGTTGCGCAGAAGCA-GAGC 229
                      * *          **    **     ** ** * **  *  * *  ** * * ** * * 

consensus_2069#0      CGCACGTGCGACCCAAAGACAGCAAGGCCACCATCTGAAGAGGAGCTCCCCCCCCCGACA 299
consensus_2069#1      CGAGGTTGTGTTCTCGCTCCCATGATATTATTAGTAATATAAGAGTATTTA--------A 281
                      **    ** *  *      *    *    *  *     * * ***              *

consensus_2069#0      GCGCCAGTGTCCCCGAACCAGCTTCAAATTGGATTATTTGATAATCCAGGACGGATCTTT 359
consensus_2069#1      GTGAAAGTGTAGCTTATTTAAATATTTAGGGGATTGTAGCACAG--CGAGCCGACGGTGG 339
                      * *  *****  *  *   *  *    *  ***** *   * *   *  * **    *  

consensus_2069#0      CTGAATGTCTTCGTTCTCTGGGCCCAGGACGGCGGCGCCACACGTCTGCTGGCCGACACC 419
consensus_2069#1      CTGATAGATTTAAGCACTTTGAACCACAGTAACGCTGCTGAGTGTTTA-TGGCAGAAGCT 398
                      ****  *  **       * *  ***      **  **     ** *  **** **  * 

consensus_2069#0      CAGGTACCTTTCTGCTGCCTCCACCAGGTT-TCTGTGATTAACGGCGAAGAGTTTTTCTC 478
consensus_2069#1      TCACGCCTCGGTTGTCGAGTCGCTCTGGTTGTGTGTCCTGCTCTGTGTCGTAACCTTGTC 458
                            *     **  *  **   * **** * ***  *   * * *  *     ** **

consensus_2069#0      TGTGGTGCTGCTTCATCTGGTCCGTGACTCCACTCA-GGAAACGACTCATTC-CTTTGTC 536
consensus_2069#1      TCTGCCGCTG--TGATCCATCCTGGGCTTTCGTACGTGGTGGCATTCCACTAACCCTAAC 516
                      * **  ****  * ***    * * *  * *   *  **   *    ** *  *  *  *

consensus_2069#0      TGCGGGGGCCACAGGCGAGTCGACAGACGAGAAGACGGACAGTTTGGCCTCGTCCACGTC 596
consensus_2069#1      CCTGTGTGGGGCCGGTG---CGGAGGACGGCTACAAGTTGTGTGCAACATTAACTTTGTG 573
                         * * *   * ** *   **   ****   * * *    **    * *   *   ** 

consensus_2069#0      CTGCTGGGTGAACTGGCCCGAACTGGCCCAGTCCACACTTTC 638
consensus_2069#1      -TGCAACATTAACTTTGTGCGACGGCAGCGTGACGTGTTGT- 613
                       ***    * ****       ** *   *    *    * *


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)