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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 727 fasta sequence
[TTTGCGACACCAACTAATGGGCTTTAATTAGTTAGTACTATGTATATACAGTTATACATTACCATGCTGTTGGGCACCATGTTGTTGTAATTTTTTTTATTTATTTTTTGTGGTGTATGCATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTACAAAATATGCACATTTTAAGGGATAAGAATGCATATGAATGTCAATAGCAGAGACAAAAAGTCCATTAAGAGCAGAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCGATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGGATACCAGCGGACTCCATACCAATGAAGGATGGCTGGAAGAGGGTCTCGGGGCAACGGAACCTCTCGTTACC]
[+] EMBL FR0055667 [TTTGCGACACCAACTAATGGGCTTTAATTAGTTAGTACTATGTATATACAGTTATACATTACCATGCTGTTGGGCACCATGTTGTTGTAATTTTTTTTATTTATTTTTTGTGGTGTATGCATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTACAAAATATGCACATTTTAAGGGATAAGAATGCATATGATTGTCAGTAGCAGAGACAAAAGGTCCATTAGGAGCATAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAAAAGCTGGCCAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGCAGGTGGACAGGGAAGCCAGGTTAGAGCCACCGATCCAGACGGAGTAATTCCTCTCGGAAGGGGCAATGATCTTGATCCTCATGGGGCTGGGGGCCAGAGCATCGATTTCC ]
[+] EMBL CA332680 [ TATGCATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTACAAAATATGCACATTTTAAAGGATAAGAATGCATATGAATGTCAATAGCAGAGACAAAAAGTCCATTAAGAGCAGAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCGATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGGATACCAGCGGACTCCATACCAATGAAGGATGGCTGGAAGAGGGTCTCGGGGCAACGGAACCTCTCGTTACC]
[-] EMBL FR0055349 [ TCTTGGTTTTTCACAGCCTCTCTCTGACAACCACAGTCAACAGACAGCTACAAAATATGCACATTTT GATAAGAATGCATATGAATGTCAATAGCAGAGACAAAAAGTCCATTAAGAGCAGAGTGCTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGACCAGAGCAGTGATTGCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGG ]
consensusID : consensus_2073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[TCACCATTAATTACCAAATGGGGAGCTGACATTTGGACCTCTTCTAACTCATCTTGAAGGGGAAGCCTTGGTACCATTGGGTCAGGCCCCAGTCGGTCGCCACACGCCTCCGTGTGGGCCTCTGGTCTCACTTTCGAGAGAGACAGGGGGCTTCTTCCTCCGGAATCTGAGTCAGTATCGGAGCCTCTCCAGAACCAGGGGTTGTGGGTTTGCTCAAGCAGCCTGCGGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTAAGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCCATGGTCCACTTCATGATGCTGTTGTAAGCGGGCTCCGGGATACC]
[+] EMBL CA333244 [TCACCATTAATTACCAAATGGGGAGCTGACATTTGGACCTCTTCTAACTCATCTTGAAGGGGAAGCCTTGGTACCATTGGGTCAGGCCCCAGTCGGTCGCCACACGCCTCCGTGTGGGCCTCTGGTCTCACTTTCGAGAGAGACAGGGGGCTTCTTCCTCCGGAATCTGAGTCAGTATCGGAGCCTCTCCAGAACCAGGGGTTGTGGGTTTGCTCAAGCAGCCTGCGGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTAAGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCCATGGTCCACTTCATGATGCTGTTGTAAGCGGGCTCCGGGATACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2073#0 TTTGCGACACCAACTAATGGGCTTTAATTAGTTAGTACTATGTATATACAGTTATACATT 60
consensus_2073#1 ------------------------------------------------TCACCATTAATT 12
** ***
consensus_2073#0 ACCATGCTGTTGGGCACCATGTTGTTGTAATTTTTTTTATTTATTTTTTGTGGTGTATGC 120
consensus_2073#1 ACCAAA----TGGGGAGC-TGACATTTGGACCTCTTCTAACTCATCTTGAAGGGGAAGCC 67
**** **** * * ** ** * * ** ** * * ** ** * * *
consensus_2073#0 ATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTAC 180
consensus_2073#1 TTGGTACCATTGGGTCAGGCCCCAGTCGGTCGCCACACGCCTCCGT--GTGGGCCTCTG- 124
**** * ** * * *** * ** * ** * * ** * * **
consensus_2073#0 AAAATATGCACATTTTAAGGGATAAGAATGCATATGAATGTCAATAGCAGAGACAAAA-- 238
consensus_2073#1 ---GTCT-CACTTTCGAGAGAGACAGGGGGCTTCTTCCT-CCGGAATCTGAGTCAGTATC 179
* * *** ** * * ** ** * * * * * * *** ** *
consensus_2073#0 --AGTCCATTAAGAGCAGAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCT 296
consensus_2073#1 GGAGCCTCTCCAGAACCAGGGGTTG----------TGGGTT-----TGCTCAAGCAGCCT 224
** * * *** * * **** * **** * *** * * **
consensus_2073#0 CAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAG 356
consensus_2073#1 GCGGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAG 284
*********************************************************
consensus_2073#0 CACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATC 416
consensus_2073#1 CACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATC 344
************************************************************
consensus_2073#0 TGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTC 476
consensus_2073#1 TGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTC 404
************************************************************
consensus_2073#0 TCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGGCCAGAGCAGTGATTTCCTTC 536
consensus_2073#1 TCGGGAGGGGCAATGATCTAA---------------GGGGCCAGAGCAGTGATTTCCTTC 449
******************* ************************
consensus_2073#0 TGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCG 596
consensus_2073#1 TGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCG 509
************************************************************
consensus_2073#0 TACAGATCCTTACGGATATCGATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGG 656
consensus_2073#1 TACAGATCCTTACGGATATCCATGGTCCACTTCATGATGCTGTTGTAAGCGGGCTCCGGG 569
******************** *** ************************* *** **
consensus_2073#0 ATACCAGCGGACTCCATACCAATGAAGGATGGCTGGAAGAGGGTCTCGGGGCAACGGAAC 716
consensus_2073#1 ATACC------------------------------------------------------- 574
*****
consensus_2073#0 CTCTCGTTACC 727
consensus_2073#1 -----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |