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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence
[CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC]
[+] EMBL CA332404 [CCCGAGTGACGTAGTGTTTTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAGTACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTTCTTCTTCGGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCC ]
[+] EMBL FR0062936 [ TCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTCGGTGTCCGAATTGAACAGTTGTGCTAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTCAAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGCCTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGTGACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCATCTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC]
consensusID : consensus_2083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence
[AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCCCAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA]
[+] EMBL CA332150 [AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCCCAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTTTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGTAACTCGAACTCTCGAAGTAGTGCAAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGTAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA]
[+] EMBL CA332631 [ CTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTTTTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTATCACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAGTACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAATTATTGTTAAGCGATAGCAATATAACAACGTTGTTCAAACGGTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACACGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2083#0 ------------------------------------------------------------
consensus_2083#1 AAGCCAGTCAAACTTTATTAATAGAATACAAACCGTCGTTCTCACAACTCTATTCACTCC 60
consensus_2083#0 ------------------------------------------CCCGAGTGACGTAGTGTT 18
consensus_2083#1 CAAAACGAATAAACAGCTGTTTTATTTAGCTGTATTATTCTTCCCGAGTGACGTAGTGTT 120
******************
consensus_2083#0 TTCGCGTAACATAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT 78
consensus_2083#1 TTCGCGTAATACAGTTCGTTTAATAACAGCGAGTTATAACAGGCAGTGCAACATTTTTAT 180
********* * ************************************************
consensus_2083#0 CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATTTCGTAG 138
consensus_2083#1 CACAAGTGGATAGTGGAGTTTAATAAATCTTCGATTTAGTGCAACATTTTTATCACGTAG 240
***************************************************** *****
consensus_2083#0 TACCGTTGCGGTAAATCAAACGTTAGTGCAAACAATATACGGTAACTCGAACTCTCGAAG 198
consensus_2083#1 TACCGTTGCGGTAAATCAACCGTTAGTGCAAACAATATATGGAAACTCGAACTCTCGAAG 300
******************* ******************* ** *****************
consensus_2083#0 TAGTGCAAAGCGATAGCAATAGCAATATAACAATAGCAATATAACAACGTTGTTCAAATG 258
consensus_2083#1 TAGTGCAAAGCGATAGCAATA--------------------TAACAACGTTGTTCAAACG 340
********************* ***************** *
consensus_2083#0 GTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACA 318
consensus_2083#1 GTAATTTCCATATTCACAGTATGACCAGCCTTGTTAAATTGTAAACACACAAAAGAAACA 400
************************************************************
consensus_2083#0 CGTAAAGATCACTTTATCAGTTCATTCCTCATCCAGGAATCCCTCGAATTCTGGTTCTTC 378
consensus_2083#1 CGCAAAGATCACTTTATCAGTTCATTCCTCATACAGGAATCCCTCGA------------- 447
** ***************************** **************
consensus_2083#0 GGTGTCCGAATTGAACAGTTGCGCGAATACGGCGTCCAACATGGCCGGCTCCGTCTCGTC 438
consensus_2083#1 ------------------------------------------------------------
consensus_2083#0 AAAGTCGTCATCAGGGTCGGTGTCGCTGGTGTTGTCTGGCATTTCAGTGACAATCCCTGC 498
consensus_2083#1 ------------------------------------------------------------
consensus_2083#0 CTTCCCGAAAGCTCGGACCACGGTCGATGCCCAGGCATTTACGATCCACTGGCAGATAGT 558
consensus_2083#1 ------------------------------------------------------------
consensus_2083#0 GACGTATGACGCTCGGCGCCGTCTCCCCGTCTTGGTGAACGTGTGTTCGCCGTTGGTCAT 618
consensus_2083#1 ------------------------------------------------------------
consensus_2083#0 CTACCGCTCCCACGCAGTTCGCAGTCTAGTTTTGAATGCCCC 660
consensus_2083#1 ------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |