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Takifugu rubripes
cluster # 2087 cluster # 2087       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2087#0 length = 751 sequences # 3  
 consensus_2087#1 length = 363 sequences # 1  
consensusID : consensus_2087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 751
fasta sequence 
                              [CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCATGAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGACTGCCAGCTGAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTTGCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAGCTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGCAAAAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATGACTAGGCACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGTTTGATGTGATCAAGTGCATCCTGGTTGGCAGTCCGGGC]

[+] EMBL BU807334             [CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGCCTGCCAGCTGAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTTGCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAGCTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGCAAAAG                                                                                                                                                  ]
[+] EMBL FR0060685            [                                                AACATGATCTATACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCATGAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCG                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA846329             [                                                                                                                                      AAGACATTGAAAAAGATAATGCCGGGGAGGTGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCATAGCCTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGTCCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGACTGCCAGCTGAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTTGCTGGATAGAATTGATCAGGCATGTGATCCAACCCATAATGCAGATGTAGCAACTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGCAATAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATGACTAGGCACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGTTTGATGTGATCAAGTGCATCCTGGTTGGCAGTCCGGGC]




>consensus_2087#0
CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAA
ACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCAT
GAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGA
GGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAGAGC
CTCCACAATCAGGAAAGTGCAAACCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGAGT
CCGGACCACCTTGACCTTATGTGTGGAGACTGTTGACTTCGACTCCCAGGACTGCCAGCT
GAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTTATCACAC
TATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACAGCATTTT
GCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAGCTGTGGT
GATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGCTTCGTGC
AAAAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATGACTAGGC
ACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGTTTGATGT
GATCAAGTGCATCCTGGTTGGCAGTCCGGGC

consensusID : consensus_2087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence 
                              [CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGTGAGTGATTGGCCAGAGCTAAAATGCTAATGCTAACCAAAATGCTGGTACGAAGCTGACTGTGCAAATGTCAACATCATTGCAGTGAATGTCCGTATGTGTTATAAAGACCCTACATGCTTAAAACGTAATAGGACCAACTCATCTTTTGCAAGCGGTATTTTCTAGCAGAACTCTAAATGCAGGNGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCAC]

[+] EMBL FR0061742            [CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGTGAGTGATTGGCCAGAGCTAAAATGCTAATGCTAACCAAAATGCTGGTACGAAGCTGACTGTGCAAATGTCAACATCATTGCAGTGAATGTCCGTATGTGTTATAAAGACCCTACATGCTTAAAACGTAATAGGACCAACTCATCTTTTGCAAGCGGTATTTTCTAGCAGAACTCTAAATGCAGGNGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCAC]




>consensus_2087#1
CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAAACTTTTTAAGTTAACACTAC
TGTTTATCATTACAATTTACCATAATAACCGTCCGACCATGAAGTTGCTCCATAAAGACA
TTGAAAAAGATAATGCCGGGTGAGTGATTGGCCAGAGCTAAAATGCTAATGCTAACCAAA
ATGCTGGTACGAAGCTGACTGTGCAAATGTCAACATCATTGCAGTGAATGTCCGTATGTG
TTATAAAGACCCTACATGCTTAAAACGTAATAGGACCAACTCATCTTTTGCAAGCGGTAT
TTTCTAGCAGAACTCTAAATGCAGGNGACTTTGATACCTGAGGAGGCAGAGGACATGTGG
CAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2087#0      CTGAAGTTGAGATGGCTTAGCTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAA 60
consensus_2087#1      --------------------CTAGCTAGTTTGCCAACTCAGTCAAATAAACATGATCCAA 40
                                          ****************************************

consensus_2087#0      ACTTATTAAGTTAACACTACTGGGGATCATTACAATTTACCATAATAACCGTCCGACCAT 120
consensus_2087#1      ACTTTTTAAGTTAACACTACTGTTTATCATTACAATTTACCATAATAACCGTCCGACCAT 100
                      **** *****************   ***********************************

consensus_2087#0      GAAGNTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGCAGGTGACTTTGATACCTGA 180
consensus_2087#1      GAAGTTGCTCCATAAAGACATTGAAAAAGATAATGCCGGGTGAGTGATT----------- 149
                      **** ***********************************   **** *           

consensus_2087#0      GGAGGCAGAGGACATGTGGCACAGCTACAACCTGCTGCAGGTGGGGGACAGCCTCAG-AG 239
consensus_2087#1      --GGCCAGAGCTAAAATGCTAATGCTA-ACCAAAATGCTGGTACGAAGCTGACTGTGCAA 206
                         * *****   *  **  *  **** * *    *** ***  *   * * **  * * 

consensus_2087#0      CCTCCACAATCAGGAAAGTGCAAA-CCGAGTCCTCCACTGGAAGCGTGGGCAGCTCCAGA 298
consensus_2087#1      ATGTCAACATCATTGCAGTGAATGTCCGTATGTGTTATAAAGACCCTACATGCTTAAAAC 266
                          **  ****    **** *   ***  *     *     * * *       *  *  

consensus_2087#0      GT--CCGGACCACCTTGACCTTATGTGTGGAG-ACTGTTGACTTCGACTCCCAGGACTGC 355
consensus_2087#1      GTAATAGGACCAACTC-ATCTTTTGCAAGCGGTATTTTCTAGCAGAACTCTAAATGCAGG 325
                      **    ****** **  * *** **   *  * * * *  *     ****  *   * * 

consensus_2087#0      CAGCT--GAGAGTTAAGGGCACAAACATAGAGGAGAACCAGTATGTTAAGATGGGAGCTT 413
consensus_2087#1      NGACTTTGATACCTGAGGAGGCAGAGGACATGTGGCAC---------------------- 363
                         **  ** *  * ***   ** *      *  * **                      

consensus_2087#0      ATCACACTATTGAGCTTGAGCTCAACAGGAAGTTCACTCTGGCTAAAAAGAGCTGGGACA 473
consensus_2087#1      ------------------------------------------------------------
                                                                                  

consensus_2087#0      GCATTTTGCTGGATAGAATTGAGCAGGCATGTGATCCAACCCAGAAGGCAGATGTAGCAG 533
consensus_2087#1      ------------------------------------------------------------
                                                                                  

consensus_2087#0      CTGTGGTGATGCAGGAGGGTCTGGCTAACGTGATGCTGGTGACCCCTGCCATGACTCTGC 593
consensus_2087#1      ------------------------------------------------------------
                                                                                  

consensus_2087#0      TTCGTGCAAAAGTGGAGGTCACCATCCCTCGCAAGAGAAGAGGAAGCTGCACTCAGCATG 653
consensus_2087#1      ------------------------------------------------------------
                                                                                  

consensus_2087#0      ACTAGGCACTGGACCGCTTCTATGAGGCGGTGATGCAGGCGATTCTCCGTCACATCAAGT 713
consensus_2087#1      ------------------------------------------------------------
                                                                                  

consensus_2087#0      TTGATGTGATCAAGTGCATCCTGGTTGGCAGTCCGGGC 751
consensus_2087#1      --------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)