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Takifugu rubripes
cluster # 2145 cluster # 2145       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2145#0 length = 469 sequences # 3  
 consensus_2145#1 length = 314 sequences # 1  
consensusID : consensus_2145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 469
fasta sequence 
                              [CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAG-CTGGAAAAGCGGGGGAGGCTTCTCCTCCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGGTGCCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG]

[+] EMBL BU804737             [CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAGCCTGGAAAAGCGGGGGAGGCTTCTCCTCCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGGTGCCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG]
[+] EMBL BU804930             [CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAG CTGGAAAAGCGGGGGA                                                                                                                       ]
[+] EMBL FR0064034            [                        TGCTCCGCTCGTGCGCTCCCGTGGCCCGATTCGCTCCCGTAAGTACCCCGGCAACCGGTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCGCCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGATGTGACATCATGGCGGCTTTCAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAG CTGGAAA  GCGGGGAGGCTTCTCCTCCCCCGGCCGACCTGGGGCTCATCTCCCTGTGCTTCGGCCT                                                                    ]




>consensus_2145#0
CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTC
CCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCG
CCGGGTGCGTAGCCGGACTCATGAGTGAGAGCACATCGGGCTGGTCAGGGACACAGGGAG
GGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTTCA
AAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTTCA
TCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAAGCGGGGGAGGCTTCTCCT
CCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGGTG
CCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG

consensusID : consensus_2145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence 
                              [GTAGCGACTTAATAAAGCTGCTGTACTCGATCCAGCTCCACTATGTGTGGCTGGCGGCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGAGGATCCTGCGACGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGCACCAAGGAGTTCTGGAGGGCCGCGTCCGGGGAATTCCTGGCCACCTTCATCTTCAGCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAGCGGGGGAGGCTTCTCCTCCCCCGACCGAGCTGGNGCTCATCTACCTGTGCTTCGGGCT]

[+] EMBL FR0063700            [GTAGCGACTTAATAAAGCTGCTGTACTCGATCCAGCTCCACTATGTGTGGCTGGCGGCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGAGGATCCTGCGACGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGCACCAAGGAGTTCTGGAGGGCCGCGTCCGGGGAATTCCTGGCCACCTTCATCTTCAGCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAGCGGGGGAGGCTTCTCCTCCCCCGACCGAGCTGGNGCTCATCTACCTGTGCTTCGGGCT]




>consensus_2145#1
GTAGCGACTTAATAAAGCTGCTGTACTCGATCCAGCTCCACTATGTGTGGCTGGCGGCCC
TCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTCCCGAGG
ATCCTGCGACGTTGTGACATCATGGCGGCTTTCAAAGGCATCTGCACCAAGGAGTTCTGG
AGGGCCGCGTCCGGGGAATTCCTGGCCACCTTCATCTTCAGCCTCCTCAGCCTGGGCTCC
ACCATCAGCTGGAAAGCGGGGGAGGCTTCTCCTCCCCCGACCGAGCTGGNGCTCATCTAC
CTGTGCTTCGGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2145#0      CGTCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGTGGCCCGACGCGCTC 60
consensus_2145#1      ------------------------------------------------------------
                                                                                  

consensus_2145#0      CCGTAAGTACCCCGGCAACCGTTCCAGCCTTTAGCTGTCATGAGGGGAGAGCTGTCTCCG 120
consensus_2145#1      --------------GTAGCGACTTAA---TAAAGCTGCTGTACTCG---ATCCAGCTCCA 40
                                    * * *   *  *   *  *****   *    *   * *   **** 

consensus_2145#0      CCGGGTGCG-TAGCCGGACTCATGAGTGAGA-GCACATCGGGCTGGTCAGGGACACAGGG 178
consensus_2145#1      CTATGTGTGGCTGGCGGCCCTCTGACAGACCTGCCCCCTGCTCCGCTCGTGCGCTCCCGT 100
                      *   *** *   * *** *   ***  **   ** *   *  * * **  *  * *  * 

consensus_2145#0      AGGGGGAGCGTGCTCACGTTTCTGGAGGTTCCTGCGTCGTTGTGACATCATGGCGGCTTT 238
consensus_2145#1      GGCCCGA-CGCGCTCCCG-------AGGATCCTGCGACGTTGTGACATCATGGCGGCTTT 152
                       *   ** ** **** **       *** ******* ***********************

consensus_2145#0      CAAAGGCATCTGGACCAAGGAGTTCTGGAGGGCCGTGTCCGGGGAATTCCTGGCCACCTT 298
consensus_2145#1      CAAAGGCATCTGCACCAAGGAGTTCTGGAGGGCCGCGTCCGGGGAATTCCTGGCCACCTT 212
                      ************ ********************** ************************

consensus_2145#0      CATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAAAGCGGGGGAGGCTTCTC 358
consensus_2145#1      CATCTTCAGCCTCCTCAGCCTGGGCTCCACCATCAGCTGGAAA-GCGGGGGAGGCTTCTC 271
                      *******  ********************************** ****************

consensus_2145#0      CTCCCCCGGCCGNCCTGGGGCTCNTCTCCCTGTGCTTCNGCCTGAGCATCGCCCCCCTGG 418
consensus_2145#1      CTCCCCCGACCGAGCTGGNGCTCATCTACCTGTGCTTCGGGCT----------------- 314
                      ******** ***  **** **** *** ********** * **                 

consensus_2145#0      TGCCGGGCTTCGGCCCCCTCAGCGGCGGACACCTCANCCCGGCCGTCACCG 469
consensus_2145#1      ---------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)