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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 760 fasta sequence
[TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCACTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGGTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCTGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCAGTCTGGACTGGCATCCCAACAATGTCCTTCTAACTGCTGGATCCTGCGATTTCAAGTGCAGGGTCTTCTCAGCCTACCTTAAAGAGGTGGAAGAGAAGCCCGGCCCCACCTCTTGGGGCAGCAAGATGCCTTTCGGGGAGATGCTGTTT]
[+] EMBL BU807123 [TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCACTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGGTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCTGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCAGT ]
[+] EMBL BU807195 [TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCACTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGGTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCATTTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCTGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCA ]
[+] EMBL CA845591 [ TCAGGTTTTTTTTCTACCAGGTTCCTC AGTC CCTCCAAGGCCGGTTCTCACGTCTGATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGAGGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGTCGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGTGTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGCCGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCGTCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCCATCCGCTCCACCATCCTCAGTCTGGACTGGCATCCCAACAATGTCCTTCTAACTGCTGGATCCTGCGATTTCAAGTGCAGGGTCTTCTCAGCCTACCTTAAAGAGGTGGAAGAGAAGCCCGGCCCCACCTCTTGGGGCAGCAAGATGCCTTTCGGGGAGATGCTGTTT]
consensusID : consensus_2152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[CCTGTGGTGTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGTTTTTTTTCTACCAGGTTCCTCAAGGCACTTCCTGGGCCGGTTCTCACGCCTGATTGGGCATGGCGCACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAATCACGAGGGTCACATCTACAAGCAAGAGGGGAGCAAATGGTGCAAGATCCATGAACTGAGGGAGCACAATG]
[+] EMBL FR0061611 [CCTGTGGTGTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATCCCTCAGGTTTTTTTTCTACCAGGTTCCTCAAGGCACTTCCTGGGCCGGTTCTCACGCCTGATTGGGCATGGCGCACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAAAGATCGTACCCAGGTGGCGCTGTGTCCCAATAATCACGAGGGTCACATCTACAAGCAAGAGGGGAGCAAATGGTGCAAGATCCATGAACTGAGGGAGCACAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2152#0 TTCGTGTTGACTGGCCAGAGTCCGCGAGCTGAGCACCCTCATCTTTTATTTGATCTGCCA 60
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 CTTTCACCCCCCCTCTCTCTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATC 120
consensus_2152#1 ----------CCTGTGGTGTTTTGTCTCCCCGCCTCTCTGCGGCGTCTCACCCGTTCATC 50
** * *****************************************
consensus_2152#0 CCTCAGG---------------GTTCCTCAAGTCACTTCCTGGTCCGGTTCTCACGTCTG 165
consensus_2152#1 CCTCAGGTTTTTTTTCTACCAGGTTCCTCAAGGCACTTCCTGGGCCGGTTCTCACGCCTG 110
******* ********** ********** ************ ***
consensus_2152#0 ATTGGTCATGGCGTACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAA 225
consensus_2152#1 ATTGGGCATGGCGCACCACAGCTTCCTGCTGGAACCCATTAGCTGCCATGCCTGGAATAA 170
***** ******* **********************************************
consensus_2152#0 AGATCGTACCCAGGTGGCGCTGTGTCCCAATAACCACGAGGTTCACATCTACAAGCAAGA 285
consensus_2152#1 AGATCGTACCCAGGTGGCGCTGTGTCCCAATAATCACGAGGGTCACATCTACAAGCAAGA 230
********************************* ******* ******************
consensus_2152#0 GGGGAGCAAATGGAGCAAGATCCATGAACTGAAGGAGCACAATGGGCAGGTGACAGGTGT 345
consensus_2152#1 GGGGAGCAAATGGTGCAAGATCCATGAACTGAGGGAGCACAATG---------------- 274
************* ****************** ***********
consensus_2152#0 CGACTGGGCTCCTGACAGTAACCGCATCGTCACCTGCGGAGCAGACCGCAATGCCTACGT 405
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 GTGGACCCTGAAAGAGGGCGCGTGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGAGC 465
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 TGCTCGCTGCGTCAAATGGTCGCCACAAGAGAACAAGTTTGCTGTGGGCAGCGGCTCTCG 525
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 TCTCATCTCCATCTGTTACTTCGAGCAAGAAAATGACTGGTGGGTGTGTAAGCACATCAA 585
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 GAAGCCCATCCGCTCCACCATCCTCAGTCTGGACTGGCATCCCAACAATGTCCTTCTAAC 645
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 TGCTGGATCCTGCGATTTCAAGTGCAGGGTCTTCTCAGCCTACCTTAAAGAGGTGGAAGA 705
consensus_2152#1 ------------------------------------------------------------
consensus_2152#0 GAAGCCCGGCCCCACCTCTTGGGGCAGCAAGATGCCTTTCGGGGAGATGCTGTTT 760
consensus_2152#1 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |