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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 714 fasta sequence
[GAGCCAGAACCACATCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCT-GGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGGAGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATCAAGCCCAAACTCAGGTCGGTGGTCTCCACCGGAGATCTGCACTGCACCGTGGCGGCCTCAGCTGCTCACATCTCCATCACCACGGCGCAGGGACAGACCGTCACGTTCTCGGGGGAGACCAAGGGCGACCTGATCAACCTGGACGCGCTGGACGATGTAACCTGGCGGCAGATCAACAAGCTAACGAGTCTGATGACGTGTCTGTCGAGGAGCCACTCCCAGCGATGAGGAGTC]
[+] EMBL CA846484 [GAGCCAGAACCACATCAAAAGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGGGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCTCTTAGGACAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGGAGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCA ]
[+] EMBL CA846382 [ TCAGCTGAACCGGGGCAGGCTGGCCCAGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCT GGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGGAGTTTGTCAGCCACCTCCCAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATCAAGC ]
[+] EMBL CA844522 [ gtAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCT GGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCT CAGGAGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATCAAGCCCAAACTCAGGTCGGTGGTCTCCACCGGAGATCTGCACTGCACCGTGGCGGCCTCAGCTGCTCACATCTCCATCACCACGGCGCAGGGACAGACCGTCACGTTCTCGGGGGAGACCAAGGGCGACCTGATCAACCTGGACGCGCTGGACGATGTAACCTGGCGGCAGATCAACAAGCTAACGAGTCTGATGACGTGTCTGTCGAGGAGCCACTCCCAGCGATGAGGAGTC]
consensusID : consensus_2164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[CAAGAGCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCATGGCAGGAAGAGCAGCGAGAACACTGGCGGGCAGCAACAGCACCGGGAA]
[+] EMBL FR0057490 [CAAGAGCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCATGGCAGGAAGAGCAGCGAGAACACTGGCGGGCAGCAACAGCACCGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2164#0 GAGCCAGAACCACATCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAG 60
consensus_2164#1 ---------CAAGAGCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAG 51
* * * *********************************************
consensus_2164#0 AAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACC 120
consensus_2164#1 AAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACC 111
************************************************************
consensus_2164#0 ATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGG 180
consensus_2164#1 ATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGG 171
************************************************************
consensus_2164#0 ATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTG 240
consensus_2164#1 ATCGGGGACCTGATCAGCGA-------------------CCTGAGGCGTCCATCACCCTG 212
******************** *********************
consensus_2164#0 AAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGAC 300
consensus_2164#1 AAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGAC 272
************************************************************
consensus_2164#0 GCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCC 360
consensus_2164#1 GCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCC 332
************** * *******************************************
consensus_2164#0 AAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGG 420
consensus_2164#1 ATGGCAGGAAGAGCAGCGAGAACACTGGCGGGCAGCAACAGCACCGGGAA---------- 382
* ***************** *********** ***** ************
consensus_2164#0 AGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATC 480
consensus_2164#1 ------------------------------------------------------------
consensus_2164#0 AAGCCCAAACTCAGGTCGGTGGTCTCCACCGGAGATCTGCACTGCACCGTGGCGGCCTCA 540
consensus_2164#1 ------------------------------------------------------------
consensus_2164#0 GCTGCTCACATCTCCATCACCACGGCGCAGGGACAGACCGTCACGTTCTCGGGGGAGACC 600
consensus_2164#1 ------------------------------------------------------------
consensus_2164#0 AAGGGCGACCTGATCAACCTGGACGCGCTGGACGATGTAACCTGGCGGCAGATCAACAAG 660
consensus_2164#1 ------------------------------------------------------------
consensus_2164#0 CTAACGAGTCTGATGACGTGTCTGTCGAGGAGCCACTCCCAGCGATGAGGAGTC 714
consensus_2164#1 ------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |