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Takifugu rubripes
cluster # 2170 cluster # 2170       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2170#0 length = 590 sequences # 3  
 consensus_2170#1 length = 253 sequences # 1  
consensusID : consensus_2170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 590
fasta sequence 
                              [GGGGCTTTTTGCTGCGGCCACCTGGGGAAACGCCATGTAAGATCTCAGGCTTTTCGAGACAAAATCCATGCAAACTCTGACAGCCGC-TCTAAATTGTAAGGAAAATTATTAGTTCTGGATGAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCGTCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTTATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAGGCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCTGGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT]

[+] EMBL BU804860             [GGGGCTTTTTGCTGCGGCCACCTGGCGAAACGCCATGTAAGATCTCAGGCTTTTCGAGACAAAATCCATGCAAACTCTGACAGCCGC TCTAAATTGTAAGGAAAATTATTAGTTCTGGATGAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCGTCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTTATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAGGCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCTGGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT]
[+] EMBL BU805571             [GGGGCTTTTTGCTGCGGCCACCTGGGCAAACGCCATGTAAGATCTCAGGCTTTTCGAGACAAAATCCATGCAAACTCTGACAGCCGC TCTAAATTGTAAGGAAAATTATTAGTTCTGGATGAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCGTCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTTATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGG                                                                                                                     ]
[+] EMBL FR0063867            [                                                          ACAAAATCCATGCAAACTCTGACAGCCGCGTCTAAATTGTAAGGAAAATTATTAGCTCTGGATGAAATCTGTACGTTCGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCCGACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCG                                                                                                                                                                                                                                               ]




>consensus_2170#0
GGGGCTTTTTGCTGCGGCCACCTGGGGAAACGCCATGTAAGATCTCAGGCTTTTCGAGAC
AAAATCCATGCAAACTCTGACAGCCGCTCTAAATTGTAAGGAAAATTATTAGTTCTGGAT
GAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAG
CTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCT
GCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACG
GAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCG
TCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTT
ATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAG
GCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCT
GGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT

consensusID : consensus_2170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence 
                              [ACAAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGGATGAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGGGGATAGATCAAATCGGTTTGAATGCAGGAGACGAGAAGCAGCTGACGAGGTTCTTTTAGCAG]

[+] EMBL FR0063815            [ACAAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGGATGAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGGGGATAGATCAAATCGGTTTGAATGCAGGAGACGAGAAGCAGCTGACGAGGTTCTTTTAGCAG]




>consensus_2170#1
ACAAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGG
ATGAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGG
AGCTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACC
CTGCGCACCGGGGATAGATCAAATCGGTTTGAATGCAGGAGACGAGAAGCAGCTGACGAG
GTTCTTTTAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2170#0      GGGGCTTTTTGCTGCGGCCACCTGGGGAAACGCCATGTAAGATCTCAGGCTTTTCGAGAC 60
consensus_2170#1      ----------------------------------------------------------AC 2
                                                                                **

consensus_2170#0      AAAATCCATGCAAACTCTGACAGCCGCTCTAAATTGTAAGGAAAATTATTAGTTCTGGAT 120
consensus_2170#1      AAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGGAT 62
                      ********* ******  ********************** ****  *************

consensus_2170#0      GAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAG 180
consensus_2170#1      GAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAG 122
                      *************          *************************************

consensus_2170#0      CTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCT 240
consensus_2170#1      CTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCT 182
                      ******************** ***************************************

consensus_2170#0      GCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACG 300
consensus_2170#1      GCGCACCGGGGATAGATCAAATCGGTTTGAATG-CAGGAGACGA-GAAGC--AGCTGACG 238
                      ******** **************** **  *** ******* *  ****    *******

consensus_2170#0      GAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCG 360
consensus_2170#1      -AGGTTCTTTTAGCAG-------------------------------------------- 253
                       ***** * **   **                                            

consensus_2170#0      TCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTT 420
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      ATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAG 480
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      GCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCT 540
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      GGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT 590
consensus_2170#1      --------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)