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Takifugu rubripes
cluster # 2197 cluster # 2197       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2197#0 length = 752 sequences # 3  
 consensus_2197#1 length = 222 sequences # 1  
consensusID : consensus_2197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 752
fasta sequence 
                              [CGGTGGAGGCTGCGTCTGTTTTCCACCGAGTGAGAACTGGCTCGAAGTTAGGAAACCAGTACGACCAGGACGGCAACGTGATCCAGGTGGAAACCAGAGAGGATGAAGAGCAGAGCATCAAGCTGACAGAGATTCTGGAGCTCCTGGTGGCTGCTGGGTACTTTAGAGCTCGAATCAAAGGACTGTCACCATTCGATAAGGTGGTCGGCGGGATGACCTGGTGCATCACCACCTGTAACTTTGACATCGACGTTGATCTCCTCTTCCAAGAAAACTCAACCATTGGACAGAAAATAGCTCTGACAGAGAAAATCGTGTCTGTGCTTCCAAAAATGAAGTGTCCTCATCGCCTGGAGCCGCATCAGATCCAAGGCCTGGATTTCATCCACATCTTCCCGGTGATCCAGTGGCTGGTGAAGAGAGCCATCGAGACCCGAGAGGAGATGGGCGACTACGTCAGAGCTTTCTCCATTTCTCAGTTCCAAAAGACTCACAGACTTCCGGAGGATGAAGAGTTTTTCCAGAGGAAGGACAAAGGTGCGAGAGCTCTCCTGGACGTGCTGGAGGTGTACAAACCTCAGCGGAAGTACCGTCGGCAGAGGGAGGCGGGCGAGCTGCTGGACGAGGAGTCCAGGGTCCACTCCACGCTGCTGGAGTACGGCAGGAGATTCGGATTCAGCAAACAGGCCGAACGAGAGAAGGAGGACGAGAGGAAGGCGTCGGCGTCCGGCCTCTCCCAGGGGGCGTCGGAG]

[+] EMBL CA588423             [CGGTGGAGGCTGCGTCTGTTTTCCACCGAGTGAGAACTGGCTCGTAGTTAGGAAACCAGTACGACCAGGACGGCAACGTGATCCAGGTGGAAACCAGAGAGGATGAAGAGCAGAGCATCAAGCTGACAGAGATTCTGGAGCTCCTGGTGGCTGCTGGGTACTTTAGAGCTCGAATCAAAGGACTGTCACCATTCGATAAGGTGGTCGGCGGGATGACCTGGTGCATCACCACCTGTAACTTTGACATCGATGTTGATCTCCTCTTCCAAGAAAACTCAACCATTGGACAGAAAATAGCTCTGACAGAGAAAATCGTGTCTGTGCTTCCAAAAATGAAGTGTCCTCATCGCCTGGAGCCGCATCAGATCCAAGGCCTGGATTTCATCCACATCTTCCCGGTGATCCAGTGGCTGGTGAAGAGAGCCATCGAGACCCGAGAGGAGATGGGCGACTACGTCAGAGCTTTCTCCATTTCTCAGTTCCAAAAGACTCACAGACTTCCGGAGGATGAAGAGTTTTTCCAGAGGAAGGACAAAGGTGCGAGAGCTCTCCTGGACGTGCTGGAGGTGTACAAACCTCAGCGGAAGTACCGTCGGCAGAGGGAGGCGGGCGAGCTGCTGGACGAGGAGTCCAGGGTCCACTCCACGCTGCTGGAGTACGGCAGGAGATTCGGATTCAGCAAACAGGCCGAACGAGAGAAGGAGGACGAGAGGAAGGCGTCGGCGTCCGGCCTCTCCCAGGGGGCGTCGGAG]
[+] EMBL CA590623             [                      CCACCGAGTGAGAACTGGCTCGAAGTTAGGAAACCAGTACGACCAGGACGGCAACGTGATCCAGGTGGAAACCAGAGAGGATGAAGAGCAGAGCATCAAGCTGACAGAGATTCTGGAGCTCCTGGTGGCTGCTGGGTACTTTAGAGCTCGAATCAAAGGACTGTCACCATTCGATAAGGTGGTCGGCGGGATGACCTGGTGCATCACCACCTGTAACTTTGACATCGACGTTGATCTCCTCTTCCAAGAAAACTCAACCATTGGACAGAAAATAGCTCTGACAGAGAAAATCGTGTCTGTGCTTCCAAAAATGAAGTGTCCTCATCGCCTGGAGCCGCATCAGATCCAAGGCCTGGATTTCATCCACATCTTCCCGGTGATCCAGTGGCTGGTGAAGAGAGCCATCGAGACCCGAGAGGAGATGGGCGACTACGTCAGAGCTTTCTCCATTTCTCAGTTCCAAAAGACTCACAGACTTCCGGAGGATGAAGAGTTTTTCCAGAGGAAGGACAAAGGTGCGAGAGCTCTCCTGGACGTGCTGGAGGTGTACAAACCTCAGCGGAAGTACCGTCGGCAGAGGGAGGCGGGCGAGCTG                                                                                                                                       ]
[+] EMBL CA332753             [                      CCACCGAGTGAGAACTGGCTCGAAGTTAGGAAACCAGTACGACCAGGACGGCAACGTGATCCAGGTGGAAACCAGAGAGGATGAAGAGCAGAGCATCAAGCTGACAGAGATTCTGGAGCTCCTGGTGGCTGCTGGGTACTTTAGAGCTCGAATCAAAGGACTGTCACCATTCGATAAGGTGGTCGGCGGGATGACCTGGTGCATCACCACCTGTAACTTTGACATCGACGTTGATCTCCTCTTCCAAGAAAACTCAACCATTGGACAGAAAATAGCTCTGACAGAGAAAATCGTGTCTGTGCTTCCAAAAATGAAGTGTCCTCATCGCCTGGAGCCGCATCAGATCCAAGGCCTGGATTTCATCCACATCTTCCCGGTGATCCAGTGGCTGGTGAAGAGAGCCATCGAGACCCGAGAGGAGATGGGCGACTACGTCAGAGCTTTCTCCATTTCTCAGTTCCAAAAGACTCACAGACTTCCGGAGGATGAAGAGTTTTTCCAGAGGAAGGACAAAGGTGCGAGAGCTCTCCTGGACGTGCTGGAGGTGTACAAACCTCAGCGGAAGTACCGTCGGCAGAGGGAG                                                                                                                                                   ]




>consensus_2197#0
CGGTGGAGGCTGCGTCTGTTTTCCACCGAGTGAGAACTGGCTCGAAGTTAGGAAACCAGT
ACGACCAGGACGGCAACGTGATCCAGGTGGAAACCAGAGAGGATGAAGAGCAGAGCATCA
AGCTGACAGAGATTCTGGAGCTCCTGGTGGCTGCTGGGTACTTTAGAGCTCGAATCAAAG
GACTGTCACCATTCGATAAGGTGGTCGGCGGGATGACCTGGTGCATCACCACCTGTAACT
TTGACATCGACGTTGATCTCCTCTTCCAAGAAAACTCAACCATTGGACAGAAAATAGCTC
TGACAGAGAAAATCGTGTCTGTGCTTCCAAAAATGAAGTGTCCTCATCGCCTGGAGCCGC
ATCAGATCCAAGGCCTGGATTTCATCCACATCTTCCCGGTGATCCAGTGGCTGGTGAAGA
GAGCCATCGAGACCCGAGAGGAGATGGGCGACTACGTCAGAGCTTTCTCCATTTCTCAGT
TCCAAAAGACTCACAGACTTCCGGAGGATGAAGAGTTTTTCCAGAGGAAGGACAAAGGTG
CGAGAGCTCTCCTGGACGTGCTGGAGGTGTACAAACCTCAGCGGAAGTACCGTCGGCAGA
GGGAGGCGGGCGAGCTGCTGGACGAGGAGTCCAGGGTCCACTCCACGCTGCTGGAGTACG
GCAGGAGATTCGGATTCAGCAAACAGGCCGAACGAGAGAAGGAGGACGAGAGGAAGGCGT
CGGCGTCCGGCCTCTCCCAGGGGGCGTCGGAG

consensusID : consensus_2197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence 
                              [GGTTTGAGTGGAAACCAGTACGACCAGGACGGCAACGGACCAGGTGGAAACCAGAGAGGATGAAGAGCAGACATCAAGCTGACAGAGATTCTGGAGCTCTGGGGCTGCTGGTACTTTAGAGCTCGAATAAAGGACTGTACCATTCGATAAGGTGGCGGCGGATACCTGGGCATCACCACCTGTAACTTTGACATGACGGTGACTCCTCTTCAAGAAACTCAC]

[+] EMBL FR0058851            [GGTTTGAGTGGAAACCAGTACGACCAGGACGGCAACGGACCAGGTGGAAACCAGAGAGGATGAAGAGCAGACATCAAGCTGACAGAGATTCTGGAGCTCTGGGGCTGCTGGTACTTTAGAGCTCGAATAAAGGACTGTACCATTCGATAAGGTGGCGGCGGATACCTGGGCATCACCACCTGTAACTTTGACATGACGGTGACTCCTCTTCAAGAAACTCAC]




>consensus_2197#1
GGTTTGAGTGGAAACCAGTACGACCAGGACGGCAACGGACCAGGTGGAAACCAGAGAGGA
TGAAGAGCAGACATCAAGCTGACAGAGATTCTGGAGCTCTGGGGCTGCTGGTACTTTAGA
GCTCGAATAAAGGACTGTACCATTCGATAAGGTGGCGGCGGATACCTGGGCATCACCACC
TGTAACTTTGACATGACGGTGACTCCTCTTCAAGAAACTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2197#0      CGGTGGAGGCTGCGTCTGTTTTCCACCGAGTGAGAACTGGCTCGAAGTTAGGAAACCAGT 60
consensus_2197#1      --------------------------------------GGTTTGAGT---GGAAACCAGT 19
                                                            ** * **     **********

consensus_2197#0      ACGACCAGGACGGCAACGTGATCCAGGTGGAAACCAGAGAGGATGAAGAGCAGAGCATCA 120
consensus_2197#1      ACGACCAGGACGGCAAC--GGACCAGGTGGAAACCAGAGAGGATGAAGAGCAGA-CATCA 76
                      *****************  *  ******************************** *****

consensus_2197#0      AGCTGACAGAGATTCTGGAGCTCCTGGTGGCTGCTGGGTACTTTAGAGCTCGAATCAAAG 180
consensus_2197#1      AGCTGACAGAGATTCTGGAGCTCTGGG--GCTGCTGG-TACTTTAGAGCTCGAAT-AAAG 132
                      ***********************  **  ******** ***************** ****

consensus_2197#0      GACTGTCACCATTCGATAAGGTGGTCGGCGGGATGACCTGGTGCATCACCACCTGTAACT 240
consensus_2197#1      GACTGT-ACCATTCGATAAGGTGG-CGGCGGA--TACCTGG-GCATCACCACCTGTAACT 187
                      ****** ***************** ******    ****** ******************

consensus_2197#0      TTGACATCGACGTTGATCTCCTCTTCCAAGAAAACTCAACCATTGGACAGAAAATAGCTC 300
consensus_2197#1      TTGACAT-GACGGTGA-CTCCTCTTC--AAGAAACTCAC--------------------- 222
                      ******* **** *** *********  *  *******                      

consensus_2197#0      TGACAGAGAAAATCGTGTCTGTGCTTCCAAAAATGAAGTGTCCTCATCGCCTGGAGCCGC 360
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      ATCAGATCCAAGGCCTGGATTTCATCCACATCTTCCCGGTGATCCAGTGGCTGGTGAAGA 420
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      GAGCCATCGAGACCCGAGAGGAGATGGGCGACTACGTCAGAGCTTTCTCCATTTCTCAGT 480
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      TCCAAAAGACTCACAGACTTCCGGAGGATGAAGAGTTTTTCCAGAGGAAGGACAAAGGTG 540
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      CGAGAGCTCTCCTGGACGTGCTGGAGGTGTACAAACCTCAGCGGAAGTACCGTCGGCAGA 600
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      GGGAGGCGGGCGAGCTGCTGGACGAGGAGTCCAGGGTCCACTCCACGCTGCTGGAGTACG 660
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      GCAGGAGATTCGGATTCAGCAAACAGGCCGAACGAGAGAAGGAGGACGAGAGGAAGGCGT 720
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      CGGCGTCCGGCCTCTCCCAGGGGGCGTCGGAG 752
consensus_2197#1      --------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)