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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 546 fasta sequence
[AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGCGGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATGGTCAAA]
[+] EMBL CA331817 [AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTG ]
[+] EMBL CA332151 [ AGTAAGCTCTTATCTGGCCAATGTTCACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCTGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGT GGGGAGCGGTTCCTG ]
[-] EMBL BU808186 [ GAGTTCTCAGCTGCTTGATGACCACTGATTTACTTGAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGCATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGCGGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGTTGTGGAAAGTTCCATAAGATTGTCCTACGCTTACAAAAGATGGTCAAA]
consensusID : consensus_2198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT]
[-] EMBL CA588892 [AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAAAAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAACTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATATGCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCATGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGAGCGGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTGGAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGAGGCTGATTCGAAAGAGCCGCTGAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2198#0 AACCCCAAGTAAAGGGAAGTACACACTGATTTAAAGTAAGCTCTTATCTGGCCAATGTTC 60
consensus_2198#1 ------------------------------------------------------------
consensus_2198#0 ACAAGGTTGTTACAGTCATATGACAGAGTTCTCAGCTGCTTGATGACCACTGATTTACTT 120
consensus_2198#1 ------------------------------------------------------------
consensus_2198#0 GAACAAAGACACAAGATTTTATATTCTAACAAATCAAAACAAGTGAAAAAAAACACACAA 180
consensus_2198#1 ------------AAGATTTTATATTTTAACAAATCAAAACAAGTGAAAAAAAACACACAA 48
************* **********************************
consensus_2198#0 AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA 240
consensus_2198#1 AAGTTGAGGAATGTAATCTAATAATTGAAATAAAAAAGACTAATCAAAGTACTTTTATAA 108
************************************************************
consensus_2198#0 CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATGTCT 300
consensus_2198#1 CTACACTCGACAATGGTGTTTTTGCTTCTTCCATGGACAATAAACTGTATTTCCATATAT 168
******************************************************** * *
consensus_2198#0 GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA 360
consensus_2198#1 GCAGAGCTTTGGCTAAAGCTGCTGAGCTATTGTCATGTGCTATTCTCTGTGAATACTGCA 228
************************************************************
consensus_2198#0 TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGGGAGC 420
consensus_2198#1 TGCTCCACACATATCAAATTACAGTATTGGGGTGTTTGAATGCGTGTTCGGTGGGG-AGC 287
******************************************************** ***
consensus_2198#0 GGCTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG 480
consensus_2198#1 GGTTCCTGAGAGCGTTAACGCACACACCCACAACATTAAAGACCAAAAATCAACATTGTG 347
** *********************************************************
consensus_2198#0 GAGTTTGGCTAAAAATGTTGTGG---AAAGTTCCATAAGATTGTCCTACGCTTACAAAAG 537
consensus_2198#1 GAGTTTGGCTAAAAATGATATGTTCCAAAGTTCTACCTGA--GGCTGAT--TCGAAAGAG 403
***************** * ** ******* * ** * * * * ** **
consensus_2198#0 ATGGTCAAA-- 546
consensus_2198#1 CCGCTGAAAAT 414
* * ***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |