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Takifugu rubripes
cluster # 2227 cluster # 2227       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2227#0 length = 710 sequences # 2  
 consensus_2227#1 length = 511 sequences # 2  
consensusID : consensus_2227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence 
                              [AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGTGCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAAGGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAATTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTATTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCATGAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAGATAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC]

[+] EMBL CA845919             [ACCGTATAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGCCTGGTTTGCCAGCGTGCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAAGGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAATTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTATTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCATGAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAGATAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC]
[+] EMBL BU806237             [AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGTGCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGATAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGTAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAAGGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAATTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTATTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCATGAGGCAACCACAGAATGGCCTTG                                                                                       ]




>consensus_2227#0
AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGT
GCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTG
TCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATC
ACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAG
GCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTC
CATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGC
AGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAA
GGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAAT
TAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTAT
TAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCAT
GAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAGA
TAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC

consensusID : consensus_2227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 511
fasta sequence 
                              [TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAGAGCTTTCAAAAGTGGCGGTGAGCAGAAGATGGAAACTCTTAACAAGGGTGAAGCGGCATTTTATGACGATCTGTACCAACAGTCCATTCACGGCCTTAGGATGGCGAACTTTCGTGCTTCATCCCCAATGACCATAGCAGGCAAAGGCTGATCCAGGACACTGAGGACTGGCAACCGCGCACCGGTACCA]

[+] EMBL FR0055447            [TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGTGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATCACCTTGGGGCTTCAGGCTGCAGGGTGCAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGCTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGTCCACCATCAGCGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGGTGAGCAGAAGATGGAAACTCTTAACAAGGGTGAAGCGGCATTTTATGACGATCTGTACCAACAGTCCATTCACGGCCTTAGGATGGCGAACTTTCGTGCTTCATCCCCAATGACCATAGCAGGCAAAGGCTGATCCAGGACACTGAGGACTGGCAACCGCGCACCGGTACCA]
[+] EMBL FR0062895            [                       CCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAGAGCT                                                                                                                                                                                          ]




>consensus_2227#1
TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCC
TGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATCACCTTGGGGCTT
CAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGG
TGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGC
CAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAG
CCTCACCCTGACCCTCACAAGAGCTTTCAAAAGTGGCGGTGAGCAGAAGATGGAAACTCT
TAACAAGGGTGAAGCGGCATTTTATGACGATCTGTACCAACAGTCCATTCACGGCCTTAG
GATGGCGAACTTTCGTGCTTCATCCCCAATGACCATAGCAGGCAAAGGCTGATCCAGGAC
ACTGAGGACTGGCAACCGCGCACCGGTACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2227#0      AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGT 60
consensus_2227#1      ------------------------------------------------------------
                                                                                  

consensus_2227#0      GCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTG 120
consensus_2227#1      ------------TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTG 48
                                  ************************************************

consensus_2227#0      TCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATC 180
consensus_2227#1      TCGGCTGGCCCCTGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATC 108
                      ****************** *********************************** *****

consensus_2227#0      ACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAG 240
consensus_2227#1      ACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAG 168
                      ************************************************************

consensus_2227#0      GCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTC 300
consensus_2227#1      GCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTC 228
                      ************************************************************

consensus_2227#0      CATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGC 360
consensus_2227#1      CATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGC 288
                      ************************************************************

consensus_2227#0      AGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAA 420
consensus_2227#1      AGCAGAAGACAGCCTCACCCTGACCCTCACAAGAGCTTTCAAAAGTGGCGGTGAGCAGAA 348
                      ******************************** ***************** *********

consensus_2227#0      GGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCAC-AACAA 479
consensus_2227#1      GA--TGGAAACTCTTAACAAGGGTGAAGC---GGCATTTTATGACGATCTGTACCAACAG 403
                      *   * *    *   * *    **  ***    * * *   *  *   * * ** **** 

consensus_2227#0      TTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTA 539
consensus_2227#1      TCCATT------CACGGCCT--TAGGATGGCGAACTTTCGTGCTTCATCCCCAATGACCA 455
                      *  *        **  ****  **     *   **  * ****     *   * *  * *

consensus_2227#0      TTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCA 599
consensus_2227#1      TAGCAGGCAAAGGCTGATCCAGGACACTGAGGAC-TGGCAACCGCGCACCGGTACCA--- 511
                      *   *      * **  **    * *** *  **   ***  ***    *  * ***   

consensus_2227#0      TGAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAG 659
consensus_2227#1      ------------------------------------------------------------
                                                                                  

consensus_2227#0      ATAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC 710
consensus_2227#1      ---------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)