|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 654 fasta sequence
[CCGGGCTTTTACCAGATTTGACCGAACCGGTTAAAACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTTTGCTATGTAAAACGTCTGTCATACAACACTTTGATTACCAATGTGACTACATGTTTTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTACATTTTCAAATCTTTCAGGCACCGTCAAAATAAAAACATGTATTGTACAAATGTAAGAAATTACGTGATTAAAATACATGTATTTGACT]
[+] EMBL CA330835 [CCGGGCTTTTACCACATTTGACCGAACCGGTTAAAACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTTTGCTATGTAAAACGTCTGTCATACAACACTTTGATTACCAATGTGACTACATGTTTTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTAC ]
[+] EMBL FR0055770 [ CAGATTTGACCGAACCGGTTAAAACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGT ]
[+] EMBL FR0056319 [ ACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTTTGCTATGTAAAACGTCTGTCATACANCACTTTTGATACCAAT ]
[+] EMBL CA330459 [ CAACACTTTGATTACCAATGTGACTACATGTTTTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTACATTTTCAAATCTTTCAGGCACCGTCAAAATAAAAACATGTATTGTACAAATGTAAGAAATTACGTGATTAAAATACATGTATTTGACT]
consensusID : consensus_2233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[GTACTGGTGTACAGTATTGGTAATGCTAATAGGCTGGCTTTTGATAAGTACCCACCCAAAGGATCCTGCTCTTTAAAACAGCACACGGTTTAGGGTCTGTTCTTACTAAAGTGCAATGGTTTATCAGCCCAAAGCTACGGATGTCTACAGTCCAGGAGTAGTTTGCAGTTTGCTTTGTCTTTCAGAGTTGGTGTCATTGAAGTTTGGTAAATTTGTACTGTTGTGTTCCTGTAGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTT]
[+] EMBL CA341134 [GTACTGGTGTACAGTATTGGTAATGCTAATAGGCTGGCTTTTGATAAGTACCCACCCAAAGGATCCTGCTCTTTAAAACAGCACACGGTTTAGGGTCTGTTCTTACTAAAGTGCAATGGTTTATCAGCCCAAAGCTACGGATGTCTACAGTCCAGGAGTAGTTTGCAGTTTGCTTTGTCTTTCAGAGTTGGTGTCATTGAAGTTTGGTAAATTTGTACTGTTGTGTTCCTGTAGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2233#0 ------------------------------------------------------------
consensus_2233#1 GTACTGGTGTACAGTATTGGTAATGCTAATAGGCTGGCTTTTGATAAGTACCCACCCAAA 60
consensus_2233#0 ------------------------------------------------------------
consensus_2233#1 GGATCCTGCTCTTTAAAACAGCACACGGTTTAGGGTCTGTTCTTACTAAAGTGCAATGGT 120
consensus_2233#0 ----------------CCGGGCTTTTAC----CAGATTTGACCG--AACCGGTTAAAACT 38
consensus_2233#1 TTATCAGCCCAAAGCTACGGATGTCTACAGTCCAGGAGTAGTTTGCAGTTTGCTTTGTCT 180
*** * *** *** * * * * **
consensus_2233#0 ACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGT 98
consensus_2233#1 TTCAGAGTTGGTGTCATTGAAGTTTGGTAAATTTGTACTGTTGTGTTCCTGTAGGTCCGT 240
* * ** * * ** ** * * * *******
consensus_2233#0 GCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATC 158
consensus_2233#1 GCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATC 300
************************************************************
consensus_2233#0 AAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGG 218
consensus_2233#1 AAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGG 360
************************************************************
consensus_2233#0 GCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCC 278
consensus_2233#1 GCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCC 420
************************************************************
consensus_2233#0 GGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGC 338
consensus_2233#1 GGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGC 480
************************************************************
consensus_2233#0 CTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATT 398
consensus_2233#1 CTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATT 540
************************************************************
consensus_2233#0 CTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATC 458
consensus_2233#1 CTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATC 600
************************************************************
consensus_2233#0 CTGTTTGCTATGTAAAACGTCTGTCATACAACACTTTGATTACCAATGTGACTACATGTT 518
consensus_2233#1 CTGTT------------------------------------------------------- 605
*****
consensus_2233#0 TTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTACATTTTCAAATCT 578
consensus_2233#1 ------------------------------------------------------------
consensus_2233#0 TTCAGGCACCGTCAAAATAAAAACATGTATTGTACAAATGTAAGAAATTACGTGATTAAA 638
consensus_2233#1 ------------------------------------------------------------
consensus_2233#0 ATACATGTATTTGACT 654
consensus_2233#1 ----------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |