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Takifugu rubripes
cluster # 2248 cluster # 2248       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2248#0 length = 610 sequences # 4  
 consensus_2248#1 length = 371 sequences # 1  
consensusID : consensus_2248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 610
fasta sequence 
                              [AAAGTTTGGACCAGGTTAATGTCTGTTCTGGCTATTTGGCTGGTCACAGGTTCACCATCAGTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCCAAAGACCTTGGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCAA---AAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGC]

[+] EMBL CA847234             [AAAGTTTGGACCAGGTTTATGTCTGTTCTGGCTATTTCGTAGGAAGACGGTTCACCATCAGTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCC ATCACCTTGGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCAA   AAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCATGCTGACGCATGTAACGCGACCTACGGCGGTGGGGCGTTTTTTTACGCGTACAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCA                                                                                                                                             ]
[+] EMBL CA846423             [                 AATGTCTGTTCTGGCTATTTGGCTGGTCACAGGTTC CTATCAGTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCCAAAGACCTTGGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCAA   AAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCATGTAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCG                                                                                                                      ]
[+] EMBL CA847216             [                    GTCTGTTCTGGCTATTTGGCTGGTCACAGGTTCACCATCTGTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCCAAAGACCTTGGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCAA   AAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGC]
[+] EMBL CA846475             [                     TCTGTTCTGGCTATTTGGCTGGCCACAGGAGCACCATCAGTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCCAAAGACCTTGGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCAAAAGAAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTA                                                     ]




>consensus_2248#0
AAAGTTTGGACCAGGTTAATGTCTGTTCTGGCTATTTGGCTGGTCACAGGTTCACCATCA
GTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCCAAAGACCTT
GGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCA
AAAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGA
AAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCAG
GCTGACGCATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACC
TACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCT
GACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTAC
GGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGAC
GCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGC
GGCGGGGCGC

consensusID : consensus_2248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence 
                              [GAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGTTAATCGGGACCGGCGTGCGGCGAGACAGCAAACTTGGACTGTTGTGTACTAAACGTCGTGGGACTTAACATGTACTTCTGGAAAGTTGACTTTTTTTTTTTTTTCTCTCCCCCATGGGTATTAAAGCAACATGGTGCCAA]

[+] EMBL CA846388             [GAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGGAAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGTTAATCGGGACCGGCGTGCGGCGAGACAGCAAACTTGGACTGTTGTGTACTAAACGTCGTGGGACTTAACATGTACTTCTGGAAAGTTGACTTTTTTTTTTTTTTCTCTCCCCCATGGGTATTAAAGCAACATGGTGCCAA]




>consensus_2248#1
GAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGGAAAACTGGCAAA
CTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTC
CAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGG
GCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCTGTTAATCGGGA
CCGGCGTGCGGCGAGACAGCAAACTTGGACTGTTGTGTACTAAACGTCGTGGGACTTAAC
ATGTACTTCTGGAAAGTTGACTTTTTTTTTTTTTTCTCTCCCCCATGGGTATTAAAGCAA
CATGGTGCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2248#0      AAAGTTTGGACCAGGTTAATGTCTGTTCTGGCTATTTGGCTGGTCACAGGTTCACCATCA 60
consensus_2248#1      ------------------------------------------------------------
                                                                                  

consensus_2248#0      GTAGTTGGGGTAAATGGAGAGGTGTTGCAGAAAAAAGAAGACTCATCTCCCAAAGACCTT 120
consensus_2248#1      ------------------------------------------------------------
                                                                                  

consensus_2248#0      GGTTTAGGGAAGGTCCTTGAACTTCTCCAGTTAATGGAGTCCAAGTTGGAGAGAAATGCA 180
consensus_2248#1      ------------------------------------------------------------
                                                                                  

consensus_2248#0      AAAGTACAAGTGGAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGG- 239
consensus_2248#1      ------------GAAACCATTGAAGTGGAAACACGGGCTTCAATCTTAAAACGTGTTGGG 48
                                  *********************************************** 

consensus_2248#0      AAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGGCGCA 299
consensus_2248#1      AAAACTGGCAAACTCATTTGAAGACCACAAATGTAACGCGACCTACGGCGGCGGGCCGCA 108
                      ******************************************************* ****

consensus_2248#0      GGCTGACGCATGTAACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGAC 359
consensus_2248#1      GGCTGACGCGTCCAACGCGACCTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGAC 168
                      ********* *  ********************* *************************

consensus_2248#0      CTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGC 419
consensus_2248#1      CTACGGCGGCGGGCCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGC 228
                      ************* **********************************************

consensus_2248#0      TGACGCGTCCAACGCGACCTACG-GCGGCGGGGC-GCAGGCTGACGCGTCCAACGCGACC 477
consensus_2248#1      TG-----TTAATCGGGACCGGCGTGCGGCGAGACAGCAAACTTG---GACTGTTGTGTAC 280
                      **     *  * ** ****  ** ****** * * ***  **     * *    * *  *

consensus_2248#0      TACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTACGGCGGCGGGGCGCAGGCT 537
consensus_2248#1      TA-AACGTCGTGGGAC---TTAACATGTACTTCTGGA---AAGTTGACTTTTTTTTTTTT 333
                      **   ** ** **  *    * **  ** *  *  **   * *  * *           *

consensus_2248#0      GACGCGTCCA-ACGCGACCTACGGCGGCGGGGCGCAGGCTGACGCGTCCAACGCGACCTA 596
consensus_2248#1      TTCTCTCCCCCATGGGTATTAAAGCAACATGGTGCCAA---------------------- 371
                        * *  **  * * *   **  **  *  ** **                         

consensus_2248#0      CGGCGGCGGGGCGC 610
consensus_2248#1      --------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)