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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 600 fasta sequence
[TTTTTTTTTTTTTTTTTTCACTTTTTACAATTTATTTAACACCAGGAAAATGGTACATATCATTTGTTGTTTTCAATGTCCTTCCGCAGTGGTAGAAAATGGCAAAGTCACCTGTGCTGAATTGTGGATCTCTTTCTTTTTTTTCCCTAAATTTCCAGGGGGAAATTTTACACAAGCATATATTATTTTCTTGTTGCCAGTGGAAACAATAGTTTCTTTTTAAAGTGTCCTGGTTGGA-TTTTTTTTTTTTTTGTGATAGCAGTCCCAAAAAAATGGTTGGAACACCGTCTTCGGAGGAGTGGTTGTAAGACATGTGGACCAATGTCAGCCAAATGAGTTTGAAAATGCAAAGGAAAAAAGGTTTTAGAGATGACTGCTAGAAAAAAAAAACAACAACGTCATGTCCATATTTCTTGCAATTTTACAAGAAGCAGACAGGACCAACGTCAACGCCAAACTCCTGATCAGGTGCACCAACATCCATAGGAGCAATGTCAATGATGGGCAGGCGGGATGTTTTAGATGTCTTGTAGTCGATGACTGTCTTGCTCCATGAGCCAGTGTGTGACGTGCAGCCGTCCTCGCTGACGCTGTATGTGA]
[+] EMBL CA846856 [TTTTTTTTTTTTTTTTTTCACTTTTTACAATTTATTTAACACCAGGAAAATGGTACATATCATTTGTTGTTTTCAATGTCCTTCCGCAGTGGTAGAAAATGGCAAAGTCACCTGTGCTGAATTGTGGATCTCTTTCTTTTTTTTCCCTAAATTTCCAGGGGGAAATTTTACACAAGCATATATTATTTTCTTGTTGCCAGTGGAAACAATAGTTTCTTTTTAAAGTGTCCTGGTTGGA TTTTTTTTTTTTTTGTGATAGCAGTCCCAAAAAAATGGTTGGAACACCGTCTTCGGAGGAGTGGTTTTAAG CATGTGGACCAATGTCAGCCAAATGAGTTTGAAAATGCAAAGGAAAAAAGGTTTTAGAGATGAC ]
[-] EMBL CA845253 [ TTCACTTTTTACAATTTATTTAACACCAGGAAAATGGTACATATCATTTGTTGTTTTCAATGTCCTTCCGCAGTGGTAGAAAATGGCAAAGTCACCTGTGCTGAATTGTGGATCTCTTTCTTTTTTTTCCCTAAATTTCC ]
[-] EMBL CA341033 [ AAATTTCCAGGGGGAAATTTTACACAAGCATATATTATTTTCTTGTTGCCAGTGGAAACAATAGTTTCTTTTTAAAGTGTCCTGGTTGGATTTTTTTTTTTTTTTGTGATAGCAGTCCCAA ]
[-] EMBL FR0055616 [ ATAGCAGTCCCAAAAAAATGGTTGGAACACCGTCTTCGGAAGAGTGGTTGTAAGACATGTGGACCAATGTCATCCAAATGAGTTTGAAAATGCAAAGGAAAAAAGGTTTTAGAGATGACTGCTAGAAAAAAAAAACAACAACGTCATGTCCATATTTCTTGCAATTTTACAAGAAGCAGACAGGACCAACGTCAACGCCAAACTCCTGATCAGGTGCACCAACATCCATAGGAGCAATGTCAATGATGGGCAGGCGGGATGTTTTAGATGTCTTGTAGTCGATGACTGTCTTGCTCCATGAGCCAGTGTGTGACGTGCAGCCGTCCTCGCTGACGCTGTATGTGA]
consensusID : consensus_2271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[GTGACTTTGCCATTTTCTACCACTGCGGATTGACCTTGAAAACAACAAATGATATGTACCATTTTCCTGGTGTTAAATAAATTGTAAAAAGTGTGAAGTGTCTTCTTGTTCTAAATGAATGGGAAACAATAGAAGGTTTGCTCAGAGAACAGCAACATAGAAAGAAGCTTCACCTTAATGGCAATATGTAGATGGCTACCTCATAACAAGAAGTCACCAAAAAAAAAAATTTTTTTTCTTAAATGAAAAGGGTTTATTTTACACAAGTCTATTGTGGGAAATCGACAACATTCAAAGGTGCTATTGACAAAACAATGAGATCCAATTACTGGTGTTTGATGGTGAGCCTCTCACTATCATACTGTAATGATTGCCACTAATGCCTGCAGATCTTTGGTGCTACAAAATTGACTCATTGTCTTGTTTTCCACGCGGTGCGATCGTTTCCTTCAGCTCGGAGAAAGTGATCACTGCACATGTAATGCATGC]
[+] EMBL CA340976 [GTGACTTTGCCATTTTCTACCACTGCGGATTGACCTTGAAAACAACAAATGATATGTACCATTTTCCTGGTGTTAAATAAATTGTAAAAAGTGTGAAGTGTCTTCTTGTTCTAAATGAATGGGAAACAATAGAAGGTTTGCTCAGAGAACAGCAACATAGAAAGAAGCTTCACCTTAATGGCAATATGTAGATGGCTACCTCATAACAAGAAGTCACCAAAAAAAAAAATTTTTTTTCTTAAATGAAAAGGGTTTATTTTACACAAGTCTATTGTGGGAAATCGACAACATTCAAAGGTGCTATTGACAAAACAATGAGATCCAATTACTGGTGTTTGATGGTGAGCCTCTCACTATCATACTGTAATGATTGCCACTAATGCCTGCAGATCTTTGGTGCTACAAAATTGACTCATTGTCTTGTTTTCCACGCGGTGCGATCGTTTCCTTCAGCTCGGAGAAAGTGATCACTGCACATGTAATGCATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2271#0 TTTTTTTTTTTTTTTTTTCACTTTTTACAATTTATTTAACACCAGGAAAATGGTACATAT 60
consensus_2271#1 --------GTGACTTTGCCATTTTCTACCACTGCGGATTGACCTTGAAAACAACAAATGA 52
* *** ** *** *** * * *** ***** * **
consensus_2271#0 CATTTGTTGTTTTCAATGTCCTTCCGCAGTGGTAGAAAATGGCAAA-GTCACCT-GTGCT 118
consensus_2271#1 TATGTACCATTTTCCTGGTGTTAAATAAATTGTAAAAAGTGTGAAGTGTCTTCTTGTTCT 112
** * ***** ** * * * *** *** ** ** *** ** ** **
consensus_2271#0 GAATTG-TGGATCTCTTTCTTTTTTTTCCCTAAATTTCCAGGGGGAAATTTTACACAAGC 177
consensus_2271#1 AAATGAATGGGAAACAATAGAAGGTTTGCT--------CAGAGAACAGCAACATAGAAAG 164
*** *** * * *** * *** * * * * **
consensus_2271#0 ATATATTATTTTCTTGTTGCCAGTGGAAACAATAGTTTCTTTTTAAAGTGTCCTGGTTGG 237
consensus_2271#1 AAGCTTCACCTTAATGGCAATA-TGTAGATGGCTACCTCATAACAAGAAGTCACCAAAAA 223
* * * ** ** * ** * * ** * ** ***
consensus_2271#0 ATTTTTTTTTTTTTTGTGATAGCAGTCCCAAAAAAATGGTTGGAACACCGTCTTCG-GAG 296
consensus_2271#1 AAAAAATTTTTTTTCTTAAATGAA-----AAGGGTTTATTTTACACAAGTCTATTGTGGG 278
* ******** * * * * ** * ** *** * * * *
consensus_2271#0 GAGTGGTTGTAAGACATGTGGACCAATGTCAGCCAAATGAGTTTGAAAATGCAAAGGAAA 356
consensus_2271#1 AAATCGACAACATTCAAAGGTGCTATTGACAAAACAATGAGATCCAAT-TACTGGTGTTT 337
* * * * ** * * * ** ** ****** * ** * * *
consensus_2271#0 AAAGGTTTTAGAGATGACTGCTAGAAAAAAAAAACAACAACGTCATGTCCATATTTCTTG 416
consensus_2271#1 GATGGT----GAGCCTCTCACTATCATACTGTAATGAT-------TGCCACTAATGCCTG 386
* *** *** *** * * ** * ** * ** * * **
consensus_2271#0 CAATTTTACAAGAAGCAGACAGGACCAACGTCAACGCCAAACTCCTGATCAGGTGCACCA 476
consensus_2271#1 CAGATCTTT--GGTGCT-ACAAAATTGAC-TCATTGTCTTGTTTTCCACGCGGTGCGATC 442
** * * * ** *** * ** *** * * * * *****
consensus_2271#0 ACATCCATAGGAGCAATGTCAATGATGGGCAGGCGGGATGTTTTAGATGTCTTGTAGTCG 536
consensus_2271#1 GTTTCCTTCAGCTCGGAGAAAGTGATCACTGCAC---ATGTAATGCATGC---------- 489
*** * * * * * **** * **** * ***
consensus_2271#0 ATGACTGTCTTGCTCCATGAGCCAGTGTGTGACGTGCAGCCGTCCTCGCTGACGCTGTAT 596
consensus_2271#1 ------------------------------------------------------------
consensus_2271#0 GTGA 600
consensus_2271#1 ----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |