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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence
[CGGAGGGATGTAAACAGGCTCGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCTGGCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGGCCACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGC]
[+] EMBL BU804983 [CGGAGGGATGTAAACAGGCTCGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCT CCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGGCCACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAG ]
[+] EMBL FR0063595 [ CGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCTGGCGGCGC GCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGAGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGG ]
[+] EMBL FR0063606 [ TCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCTGGCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCGGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGGCTGCACGTACGAGCAGGCCAGA ]
[+] EMBL CA333054 [ CTGCTCATCGACCGCTCTTTACTCATCGATACC GGCCAAACGCCT CCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTCCACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGC]
consensusID : consensus_2273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[GCTGGAAACTCGATAACAGGGTTATCACGCAGTTACTGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTCCACTGTGAAAAAGACGAGACCCCGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGCTCATGTGCTCAGGGATGGAAAATCAGCAGTTCCGACAGGACCAAGTGTGTACCCACAGGGAGATTCCCCTGTGGGAAGGTC]
[+] EMBL BU804565 [GCTGGAAACTCGATAACAGGGTTATCACGCAGTTACTGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTCCACTGTGAAAAAGACGAGACCCCGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGCTCATGTGCTCAGGGATGGAAAATCAGCAGTTCCGACAGGACCAAGTGTGTACCCACAGGGAGATTCCCCTGTGGGAAGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2273#0 CGGAGGGATGTAAACAGGCTCGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGA 60
consensus_2273#1 ------------------------------------------------------------
consensus_2273#0 TACCGGGCCAAACGCCTGGCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGAT 120
consensus_2273#1 ------------------------------------------GCTGGAAACTCGAT-AAC 17
* * *** * *
consensus_2273#0 ACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGAC 180
consensus_2273#1 AGGGTTATCACG-CAGTTACTGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGAC 76
* * * * ** ***************************************
consensus_2273#0 CTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGC 240
consensus_2273#1 CTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGC 136
************************************************************
consensus_2273#0 GCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCT 300
consensus_2273#1 GCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCT 196
************************************************************
consensus_2273#0 CTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAG 360
consensus_2273#1 CTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAG 256
************************************************************
consensus_2273#0 AAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATC 420
consensus_2273#1 AAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATC 316
************************************************************
consensus_2273#0 TTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCC 480
consensus_2273#1 TTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCC 376
************************************************************
consensus_2273#0 ATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGGC 540
consensus_2273#1 ATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTC 436
********************************************************** *
consensus_2273#0 CACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTC 600
consensus_2273#1 CACTGTGAAAAAGACGAGACCCCGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTC 496
********************** *************************************
consensus_2273#0 TGTAAACCGGGCTACACATCTTTTGTGTGC------------------------------ 630
consensus_2273#1 TGTAAACCGGGCTACACATCTTTTGTGTGCTCATGTGCTCAGGGATGGAAAATCAGCAGT 556
******************************
consensus_2273#0 ---------------------------------------------------
consensus_2273#1 TCCGACAGGACCAAGTGTGTACCCACAGGGAGATTCCCCTGTGGGAAGGTC 607
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |